期刊文献+

不同环境中土壤微生物总DNA的提取与纯化 被引量:14

Extraction and purification of total DNA of soil microorganisms in different environments
下载PDF
导出
摘要 采用SDS高盐缓冲液抽提法提取了林地、厂区、菜地3种不同环境中土壤微生物总DNA,结果表明,该方法可以从土壤微生物中提取到长度大于23.1kb的DNA;不同环境中提取的DNA产量和纯度都存在一定的差异,每克干土的DNA提取量介于53.55~579.93μg之间,其中以处于原始状态的丛林提取量最高。粗提的土壤微生物DNA采用酚氯仿和柱式腐殖酸去除剂进行纯化,纯化后的土壤微生物DNA可以用于PCR扩增,使用细菌16SrDNA基因的引物可以扩增到相应的片段。 In this experiment, the total DNA of soil microorganisms from forest land, factory area and vegetable plot were extracted by high salt buffer solution of SDS extraction method. The results showed that the extracted DNA length of soil microorganisms was over 23.1 kb by this method. The DNA amount and purity of different soil microorganisms were different, the extracted DNA amount was 53.55-579.93 μg per gram dry soil,and the extracted DNA amount of soil microorganisms in original forest was the highest. The crude extracted DNA of soil microorganisms was purified by phenolchloroform and column humic acid, then purified DNA could be used as templates for PCR amplification, and corresponding fragments could be amplified by using primers of bacterial 16S rDNA gene.
出处 《广西农业科学》 CSCD 2008年第1期12-16,共5页 Guangxi Agricultural Sciences
基金 中央公益性科研院所基本科研业务专项(2007hzslJ011)
关键词 SDS 土壤微生物 DNA提取 PCR扩增 SDS soil microorganisms DNA extraction PCR amplification
  • 相关文献

参考文献16

  • 1Ogram A. Discussion soil molecular microbial ecology at age 20: Methodological challenges for the future[J]. Soil Biology & Biochemistry, 2000, 32(11): 1499-1504.
  • 2Amann R I, Ludwig W, Schleifer K H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation[J ]. Microbiology Review, 1995, 59(1): 143-169.
  • 3Handelsman J, Rondon M R, Brady S F. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products[J ]. Chemical & Biology, 1998, 5(10):245-249.
  • 4Florent A, Beltran R B, David B. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information [J]. BMC Bioinformaties, 2005, 41(6): 1-9.
  • 5阎冰,洪葵,许云,马超.宏基因组克隆——微生物活性物质筛选的新途径[J].微生物学通报,2005,32(1):113-117. 被引量:38
  • 6许云.红树林土壤宏基因组文库的改建及生物活性筛选[D].华南热带农业大学硕士学位论文,2005:6-9.
  • 7张瑞福,曹慧,崔中利,李顺鹏,樊奔.土壤微生物总DNA的提取和纯化[J].微生物学报,2003,43(2):276-282. 被引量:142
  • 8Weisburg W G, Barns S M, Pelletier D A, Lane D J. 16S ribosomal DNA amplification for phylogenetic study [J]. Journal of Bacteriology, 1991, 173(2): 697-703.
  • 9周桔,雷霆.土壤微生物多样性影响因素及研究方法的现状与展望[J].生物多样性,2007,15(3):306-311. 被引量:175
  • 10钟文辉,蔡祖聪.土壤微生物多样性研究方法[J].应用生态学报,2004,15(5):899-904. 被引量:118

二级参考文献144

  • 1李慧,陈冠雄,张颖,张成刚.分子生物学方法在污染土壤微生物多样性研究中的应用[J].土壤学报,2004,41(4):612-617. 被引量:14
  • 2钟文辉,蔡祖聪.土壤管理措施及环境因素对土壤微生物多样性影响研究进展[J].生物多样性,2004,12(4):456-465. 被引量:122
  • 3Acinas SG,Anton J,Rodriguez-Valera F.1999.Diversity of freeliving and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16s RNA.Appl Environ Microbiol,65:514-522
  • 4Amann RI,Krumbolz L,Stahl DA.1990.Fluorescent-oligonucleotide probing of whole cells fcr determinative,phylogenetic,and environmental studies in microbiology.J Bacteriol,172:762-770
  • 5Amann RI,Ludwig W,Schleifer KH.1995.Phylogenetic identification and in situ detection of individual microbial cells without cultivation.Microbiol Rev,59:143-169
  • 6Anthony G,O'Donnell,Gorres EG.1999.16S rDNA methods in soil microbiology.Current Opinion Biotechnol,10:225-229
  • 7Barthelet M,Whyte LG,Greer CW.1996.Rapid,direct extraction of DNA from soils for PCR analysis using polyvinyl polypyrrolidone spin columns.FEMS Microbiol Lett,138:17-22
  • 8Bochner B.1989.''Bresthprints'' at the microbial level.ASMNews,55; 536-539
  • 9Borneman J,Skroch PW,O'Sullivan KM,et al.1996.Molecular microbial diversity of an agricultural soil in Wisconsin.Appl Envi ron Microbiol,62:1935-1943
  • 10Borneman J,Triplett EW.1997.Molecular microbial diversity in soils from esstern Amazonian:Evidence for unusual microorganisms and microbial population shifts associated with deforestation.Appl Environ Microbiol,63:2647~2653

共引文献471

同被引文献233

引证文献14

二级引证文献70

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部