期刊文献+

用新设计引物调查武汉汉族Penta D和Penta E基因座遗传多态性 被引量:2

Genetic polymorphisms of the pentanucleotide repeat loci Penta D and Penta E in Wuhan Han population by re-designed primers
下载PDF
导出
摘要 目的 研究PentaD和PentaE基因座分型引物设计 ,调查PentaD和PentaE基因座在武汉汉族人群中的遗传多态性。方法 用重新设计的PentaD和PentaE基因座分型引物 ,采用热启动PCR和PAGE技术对 2 81名武汉地区汉族无关个体进行分型调查 ,并将其分型结果与Promega公司的PowerPlexTM16系统荧光标记复合扩增试剂盒分型结果进行比较。结果 新设计引物扩增产物的片段大小范围分别为 15 3~ 198bp和 10 7~ 2 12bp ,其分型结果与PowerPlexTM16系统的分型结果完全一致 ,且用银染法检测的灵敏度显著提高 (由 0 5ng提高到 0 2ng)。PentaD和PentaE基因座在武汉汉族群体分别检出 10个和 2 1个等位基因 ,其基因型频率分布均符合Hardy Weinberg平衡。家系调查证实了其等位基因的传递符合孟德尔遗传规律。两基因座的个体识别能力 (DP)分别为 0 92 62、 0 9860 ,非父排除率 (PE)分别为 0 665 1、 0 83 2 5。结论 新设计引物用于PentaD和PentaE基因座的分型检测准确可靠 ,两基因座多态性程度高 ,在法医学个人识别和亲子鉴定中具有使用价值。 Objective To study the primer design for Penta D and Penta E genotyping and investigate the genetic polymorphisms of these two loci in Chinese Han population in Wuhan.Methods 281 unrelated Chinese individuals living in Wuhan were typed by hot-start PCR with re-designed Penta D and Penta E genotyping primers and PAGE technique,and the results were compared with those by the PowerPlex TM 16 system of Promega.Results The amplified fragment size of Penta D and Penta E loci with re-designed primers ranged between 153~198bp and 107~212bp respectively,which were consistent with the results obtained by the re-designed primers and PowerPlex TM 16 system,and the re-designed primers had a higher sensitivity than PowerPlex TM 16 system (0.2ng vs 0.5ng) by silver staining.10 and 21 alleles were observed for Penta D and Penta E in Chinese Han population in Wuhan,and the genotype distributions of the two loci were in accordance with Hardy-Weinberg equilibrium.Family studies confirmed Mendelian inheritance of alleles.The power of discrimination (DP) for Penta D and Penta E were 0.926 2 and 0.986 0,and the power of exclusion (PE) were 0.665 1 and 0.832 5 respectively.Conclusion The re-designed primers for Penta D and Penta E genotyping are reliable.These two loci are highly polymorphic in Chinese Han population and can be used in forensic identification and paternity test.
出处 《中国法医学杂志》 CSCD 2004年第4期222-226,共5页 Chinese Journal of Forensic Medicine
关键词 引物 武汉市 汉族 Penta D Penta E 基因座 遗传多态性 法医物证学 引物设计 Forensic biological evidence Primer design Penta D locus Penta E locus Genetic polymorphisms Wuhan,China
  • 相关文献

参考文献10

  • 1Levedakou EN, Freeman DA, Budzynski M J, et al. Characterization and validation studies of PowerPlexTM 2. 1, a nine-locus short tandem repeat (STR) multiplex system and Penta D monoplex [ J ]. J Forensic Sci, 2002, 47 (4):757 - 772.
  • 2Krenke BE, Tereba A, Anderson SJ, et al. Validation of a 16 - locus fluorescent multiplex system [ J ]. J Forensic Sci,2002, 47 (4): 773-785.
  • 3Bacher J, Schumm JW. Development of highly polymorphic pentanucleotide tandem repeat loci with low stutter [ J ]. Profiles in DNA, 1998, 2 (2): 3 -6.
  • 4Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material [ J ]. Biotechniques, 1991, 10: 506 -513.
  • 5Bassam B J, Caetano-Anolles G, Gresshoff PM. Fast and sensitive silver staining of DNA in polyacrylamide gels [ J ].Anal Biochem, 1991, 196 (1): 80-83.
  • 6Guo SW, Thompson EA. Performing the exact test of HardyWeinberg proportion for multiple alleles [ J ]. Biometrics,1992, 48: 361 -372.
  • 7庾蕾,伍新尧,黄艳梅,蔡贵庆,许传超,童大跃.用荧光标记MVR-PCR方法研究中国汉族人群DYF155S1基因座多态性[J].Acta Genetica Sinica,2003,30(1):15-19. 被引量:12
  • 8刘超,李越,王穗保,刘长晖,刘宏,陈晓晖.广州地区汉族人群PentaD及PentaESTR基因座频率[J].中国法医学杂志,2001,16(3):164-165. 被引量:9
  • 9顾明波,王剑,杜庆新,赵金锐,黄玉丽,李晓平.黑龙江地区汉族人群PentaD和PentaE遗传多态性[J].中国法医学杂志,2003,18(3):167-168. 被引量:2
  • 10刘秋玲,陆惠玲,吕德坚,曾艳红.中国5个汉族群体PentaD和PentaE基因座的遗传多态性[J].法医学杂志,2003,19(1):24-26. 被引量:8

二级参考文献21

  • 1王保捷,丁梅,赵东,庞灏,李春梅.中国汉族与日本群体DYFl55S1基因座的遗传多态性[J].中国法医学杂志,2002,17(2):67-69. 被引量:3
  • 2Walsh P S,Bio Techniques,1991年,10卷,506页
  • 3MullisKB FerreF GibbsRA 陈受宜 朱立煌 等译.聚合酶链式反应[M].北京:科学出版社,1997.285-289.
  • 4刘秋玲 吕德坚 伍新尧 等.亲子鉴定中2个STR基因座突变1例[J].中国法医学杂志,2001,16(4):238-239.
  • 5Tajima F.Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.Genetics,1989,1239(3):585.
  • 6Hou Y P,Zhang J,Li Y B,Wu J,Zhang S Z,Prinz M.Allele sequences of six new Y-STR loci and haplotypes in the Chinese Han population.Forensic Sci Int,2001,118(2~3):147~152.
  • 7Caglia A,Dobosz M,Boschi I,d'Aloja E,Pascali V L.Increased forensic efficiency of a STR-based Y specific haplotype by addition of the highly polymorphic DYS385 locus.Int J Legal Med,1998,111(3):142~146.
  • 8Jobling M A,Bouzekri N,Taylor P G.Hypervariable digital DNA codes for human paternal lineages:MVR-PCR at the Y-specific minisatellite,MSY1 (DYF155S1).Hum Mol Genet,1998,7(4):643~653.
  • 9Bouzekri N,Taylor P G,Hammer M F,Jobling M A.Novel mutation processes in the evolution of a haploid minisatellite,MSY1:array homogenization without homogenization.Hum Mol Genet,1998,7(4):655.
  • 10Jeffreys A J,MacLeod A,Tamaki K,Neil D L,Monckton D G.Minisatellite repeat coding as a digital approach to DNA typing.Nature,1991,354(350):204~209.

共引文献24

同被引文献15

  • 1Ohtaki H, Yamamoto T, Yoshikawa S, et al. Allele frequency distributions at three pentanucleotide repeat STRs in a Japanese population[J]. J Forensic Sci, 2006, 51: 193-194.
  • 2Yamamoto T, Uchihi R, Ando Y, et al. Newly designed multiplex amplification and genotyping system at four pentanucleotide repeat STR loci useful for degraded mixed DNA specimens [ C ]. International Congress Series, 2006, 1288: 516-518.
  • 3Hou Y P, Tang J P, Dong J G, et al. Further characterization and population data for the pentanucleotide STR polymorphism D10S2325[J].Forensic Sei Int, 2001, 123 : 107-110.
  • 4Bacher J, Schumm J W. Development of highly polymorphic pentanucleotide tandem repeat loci with low stutter [ J ]. Profiles in DNA, 1998, 2(2) : 3-6.
  • 5Walsh P S, Metzger D A, Higuchi R. Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material[J]. Biotechniques, 1991, 10: 506-513.
  • 6Guo S W, Thompson E A. Performing the exact test of Hardy-Weinberg proportion for multiple alleles [ J ]. Biometrics. 1992. 48: 361-372.
  • 7Wiegand P, Lareu M V, Schtirenkamp M, et al. D18S535, DIS1656 and D10S2325: three efficient short tandem repeats for forensic genetics [J]. Int J Legal Med, 1999, 112(6) : 360-363.
  • 8Shrestha S, Smith M W, Beaty T H, et al. Theory and methodology for utilizing genes as biomarkers to determine potential biological mixtures [ J ]. Ann Epidemiol, 2005, 15(1) : 29-38.
  • 9Shrestha S, Strathdee S A, Broman K W, et al. Unknown biological mixtures evaluation using STR analytical quantification[J]. Electrophoresis, 2006, 27(2):409-415.
  • 10Brownstein M J, Carpten J D, Smith J R. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping [ J]. Biotechniques, 1996, 20(6) :1004-1010.

引证文献2

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部