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药物分子对接中应用网格的研究与进展 被引量:7

Research and Development of Molecule Docking Design Based on Grid
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摘要 药物分子对接所涉及的搜索空间非常巨大 ,需要耗费大量的时间 ,并且对计算环境也有较高的要求 将网格技术应用于药物分子对接中 ,能有效地解决上述问题 首先对分子对接理论做了简单介绍 ;然后 ,利用网格数据传输和网格任务调度等网格技术对分子对接过程进行了优化 ,有效利用了网格结点资源 ,并降低了药物分子的对接时间 ; Rigid conditions related to computing environment are required by drug molecular docking design, which can be satisfied through combining it with the techniques of grid.In this paper, the basic theory of drug molecular docking design is first briefly described, and then two correlative grid techniques are introduced, through which, the docking time is reduced and the grid resources are used more efficiently.The results of example test show that the combination of drug molecular docking design and grid techniques is efficient and reasonable.
出处 《计算机研究与发展》 EI CSCD 北大核心 2004年第12期2054-2059,共6页 Journal of Computer Research and Development
基金 国家"九七三"重点基础研究发展规划基金项目 (G19990 3 2 80 5 ) 国家自然科学基金项目 (10 2 72 0 3 0)
关键词 分子对接 配体 受体 网格 molecule docking ligand receptor grid
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参考文献6

  • 1Grant McFadden. The smallpox research grid project. http://www.grid.org/projects/smallpox, 2004
  • 2E Bonnie. The Drug Design and Optimization Lab. http: //www.d2ol.com/dOL/download-instructions.html, 2004
  • 3H Kubinyi. Burger's medicinal chemistry and drug discovery. In: M E Wolff ed, Principles and Practice, Vol 1. New York: John Wiley & Sons, 1995. 497~571
  • 4Mike Weldon. PNAC Facility Cambridge University. http://www.bioc.cam.ac.uk/pnac/, 2004
  • 5Pablo Rodriguez, Ernst W Biersack. Dynamic parallel access to replicated content in the Internet. IEEE/ACM Trans on Networking, 2002, 10(4): 455~465
  • 6Peng Tao, Luhua Lai. Protein ligand docking based on empirical method for binding affinity estimation. Journal of Computer-Aided Molecular Design, 2001, 15: 429~446

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