期刊文献+

单核苷酸多态性检测方法的研究进展 被引量:62

Approaches for SNP Genotyping
下载PDF
导出
摘要 单核苷酸多态性(single nuc leotide polymorph ism,SNP)的研究已成为人类后基因组时代的主要内容之一。因此建立高度自动化和高通量的SNP检测分析技术十分重要。文章系统地介绍了最新发展的几种SNP检测技术的原理和检测平台,详细阐述了等位基因特异性杂交、内切酶酶切技术、引物延伸法、寡核苷酸连接反应等SNP检测原理,以及平板读数仪、基因芯片、微球阵列技术和质谱仪等检测平台,并对SNP高通量检测技术的发展进行了展望。 With the completion of the Human Genome Project (HGP), typing single nucleotide polymorphisms (SNPs) has become one of the main tasks in the post-genome era. Consequently, a robust, flexible and cost-effective technique for SNP typing is essential to analyze a large number of SNPs. The latest genotyping technologies and the relative detection platforms were introduced systematically. The principle of SNP typing was described in detail in respect of allele-specific hybridization, restriction enzyme digestion, primer extension and oligonucleotide ligation assay, as well as the genotyping platforms of plate readers, genechips, bead array and mass spectrometry. Moreover, the way to the high-throughput genotyping in the future was briefly discussed.
出处 《遗传》 CAS CSCD 北大核心 2006年第1期117-126,共10页 Hereditas(Beijing)
基金 国家自然科学基金资助(编号:30270368)~~
关键词 单核苷酸多态性 检测技术 检测平台 SNP genotyping technologies genotyping platforms
  • 相关文献

参考文献79

  • 1Sachidanandam R, Weissman D, Schmidt S C, Kakol J M,Stein L D, Marth G, Sherry S, Mullikin J C, Mortimore B J,Willey D L, Hunt S E, Cole C G, Coggill P C, Rice C M, NingZ, Rogers J, Bentley D R, Kwok P Y, Mardis E R, Yeh R T,Schultz B, Cook L, Davenport R, Dante M, Fulton L, Hillier L,Waterston R H, McPherson J D, Gilman B, Schaffner S, Van Etten W J, Reich D, Higgins J, Daly M J, Blumenstiel B, Baldwin J, Stange-Thomann N, Zody M C, Linton L, Lander E S,Altshuler D. A map of human genome sequence variation containing 1.42 million SNP. Nature, 2001, 409: 928-933.
  • 2Eric L. Application of SNP technologies in medicine: lessons learned and future challenges. Genome Res, 2001, 11: 927-929.
  • 3高秀丽,景奉香,杨剑波,赵建龙.单核苷酸多态性检测分析技术[J].遗传,2005,27(1):110-122. 被引量:29
  • 4赵广荣,扬帆,元英进,髙秀梅,张军平.单核苷酸多态性检测方法的新进展[J].遗传,2005,27(1):123-129. 被引量:19
  • 5Wang D G, Fan J B, Siao C J, Berno A, Young P, Sapolsky R,Ghandour G, Perkins N, Winchester E, Spencer J, Kruglyak L,Stein L, Hsie L, Topaloglou T, Hubbell E, Robinson E, Mittmann M, Morris M S, Shen N, Kilburn D, Rioux J, Nusbaum C,Rozen S, Hudson T J, Lander E S. Large-scale identification,mapping and genotyping of single-nucleotide polymorphisms in the human genome. Science, 1998, 280 :1077- 1082.
  • 6Mullikin J C, Hunt S E, Cole C G, Mortimore B J, Rice C M,Burton J, Matthews L H, Pavitt R, Plumb R W, Sims S K, Ainscough R M, Attwood J, Bailey J M, Barlow K, Bruskiewich R M, Butcher P N, Carter N P, Chert Y, Clee C M, Coggill P C,Davies J, Davies R M, Dawson E, Francis M D, Joy A A,Lamble R G, Langford C F, Macarthy J, Mall V, Moreland A,Overton-Larty E K, Ross M T, Smith L C, Steward C A, Sulston J E, Tinstey E J, Turney K J, Willey D L, Wilson G D,McMurray A A, Dunham h Rogers J, Bentley D R.-An SNP map of human chromosome 22. Nature, 2000, 407: 516-520.
  • 7Holland P M, Abramson R D, Watson R, Gelfand D H. Detection of specific polymerase chain reaction product by utilizing the 5'→3' exonuclease activity of thermus aquaticus DNA polymerase. Proc Natl Acad Sci USA, 1991, 88:7276-7280.
  • 8Howell W M, Jobs M, Gyllensten U, Brookes A J. Dynamic allele-specific hybridization. A new method for scoring single nucleotide polymorphisms. Nat Biotechnol, 1999, 17: 87-88.
  • 9Yagi S, Kramer F R. Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol, 1996, 14: 303-308.
  • 10Livak K J, Marmaro J, Todd J A. Towards fully automated genome-wide polymorphism screening. Nature Genet, 1995, 9:341 -342.

二级参考文献103

  • 1[15]Ahmadian A, Gharizadeh B, Gustafsson AC, et al. Single-nucleotide polymorphism analysis by pyrosequencing. Anal Biochem [J], 2000,280(1):103-110.
  • 2[16]Hyman ED. A new method of sequencing DNA. Anal Biochem [J], 1988,174(2):423-436.
  • 3[17]Nyren P, Pettersson B, Uhlen M. Solid phase DNA minisequencing by an enzymatic luminometric inorganic pyrophosphate detection assay. Anal Biochem [J], 1993,208(1):171-175.
  • 4[18]Hollstein M, Sidransky D,Vogelstein B, et al. P53 mutations in human cancers. Science [J], 1991,253:49-53.
  • 5[19]Gao HG, Chen JK, Stewart J, et al. Distribution of P53 and K-ras mutations in human lung cancer tissues. Carcinogenesis [J], 1997,18(3):473-478.
  • 6[1]Schmalzing D, Belenky A, Novotny MA, et al. Microchip electrophoresis: a method for high-speed SNP detection. Nucleic Acids Res [J], 2000,28(9):E43.
  • 7[2]Fan JB CX, Halushka MK, Berno A, et al. Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays. Genome Res [J], 2000,10(6):853-860.
  • 8[3]Sauer S, Lechner D, Berlin K, et al. A novel procedure for efficient genotyping of single nucleotide polymorphisms. Nucleic Acids Res [J], 2000,28(5):E13.
  • 9[4]Fei Z, Smith LM. Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom [J], 2000,14(11):950-959.
  • 10[5]Chen J, Iannone MA, Li MS, et al. A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res [J], 2000,10(4):549-557.

共引文献51

同被引文献892

引证文献62

二级引证文献359

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部