期刊文献+

从线粒体控制区全序列变异看短颌鲚和湖鲚的物种有效性 被引量:85

Species validities of Coilia brachygnathus and C.nasus taihuensis based on sequence variations of complete mtDNA control region
下载PDF
导出
摘要 经克隆测序获得我国七丝鲚(Coiliagrayii)、凤鲚(C.mystus)、刀鲚(C.nasus)和短颌鲚(C.brachygnathus)以及太湖湖鲚(C.nasus taihuensis)等4个种和1亚种32尾个体的mtDNAD-loop区全序列,以日本鳀(Engraulis japonicus)和秘鲁鳀(E.ringens)为外类群构建了中国鲚属的分子系统发育树,并讨论了短颌鲚和湖鲚的物种有效性。结果显示,七丝鲚的D-loop区全序列长1,208bp,凤鲚1,279-1,361bp,刀鲚1,252-1,290bp,短颌鲚1,214-1,252bp,湖鲚1,252-1,442bp,除七丝鲚外的其他种类个体间均表现出序列长度的多态性。短颌鲚、刀鲚和湖鲚三者间的平均K2-P遗传距离仅为0.011-0.020,明显小于它们与凤鲚、七丝鲚及外类群间的遗传距离(0.051-0.349)。以邻接法和最大简约法构建的系统发育树表明,刀鲚、短颌鲚及湖鲚均未各自构成单系,而是共同构成一个单系群,三者并未发生显著分化。研究表明,短颌鲚和湖鲚为刀鲚的淡水生态型种群,并非有效物种。系统发育分析表明,中国鲚属3个有效物种间以凤鲚最为原始,刀鲚和七丝鲚为姐妹群,处于较进化的位置。推测凤鲚可能是鲚属祖先种最早从起源中心扩散到西北太平洋的后裔,而刀鲚和七丝鲚则是凤鲚在演化过程中分别适应寒冷和温暖气候而分化出的物种。 We determined 32 complete mitochondrial control region (D-loop region) sequences of Coilia species, including C. nasus, C. grayii, C. mystus, C. brachygnathus and the so-called C. nasus taihuensis, to investigate the validity of disputed species C. brachygnathus and C. nasus taihuensis, and to discuss the phylogenetic relationships of Coilia in China. Engraulis japonicus and E. ringens were used as outgroups. Sequences length ofC. grayii, C. mystus, C. nasus, C. brachygnathus and C. nasus taihuensis were 1,208 bp, 1,279-1,361 bp, 1,252-1,290 bp, 1,214-1,252 bp, and 1,252-1,442 bp, respectively. Except for C. grayii, other Coilia species have length variations among individuals. The average K 2-P distances among C. brachygnathus, C. nasus and C. nasus taihuensis ranged from 0.011 to 0.020, while the average distances between these three species and the species of C. grayii, C. mystus and outgroups ranged from 0.051 to 0.349, thus showing significant difference between the former and latter species. The phylogenetic trees estimated by maximum parsimony (MP) and neighbor-joining (N J) methods indicated that the individuals of C. nasus, C. nasus taihuensis and C. brachygnathus failed to form monophyletic clades. These results revealed that C. nasus taihuensis and C. brachygnathus should be considered the same species and C. nasus is a valid species name. The phylogenetic result also suggests that C. mystus is the most basal among the three valid species of Coilia, while C. grayii and C. mystus are more derived and are sister groups. We presume that C. mystus is the earliest descendant of Coilia ancestor which dispersed from the original center to the northwest Pacific Ocean. C. nasus and C. grayii are the species diverged from C. mystus adapted to cold and warm environment, respectively.
出处 《生物多样性》 CAS CSCD 北大核心 2007年第3期224-231,共8页 Biodiversity Science
基金 上海市科学技术委员会重大计划(04DZ19306) 上海市农业委员会攻关项目[2003(1-4)] 上海市重点学科建设项目(Y1101)
关键词 鲚属 物种有效性 线粒体控制区 分子系统发育 Coilia, species validity, mtDNA control region, molecular phylogeny
  • 相关文献

参考文献31

  • 1Bentzen P,Leggett WC,Brown GC.(1988) Length and restriction site heteroplasmy in the mitochondrial DNA of American shad (Alosa sapidissima).Genetics,118,509-518.
  • 2程起群,韩金娣.鲚属两种群的形态变异及综合判别(英文)[J].湖泊科学,2004,16(4):356-364. 被引量:28
  • 3程起群,李思发.刀鲚和湖鲚种群的形态判别[J].海洋科学,2004,28(11):39-43. 被引量:58
  • 4Cheng QQ,Lu DR,Ma L.(2005) Morphological differences between close populations discernible by multivariate analysis:a case study of genus Coilia (Teleostei:Clupeiforms).Aquatic Living Resources,18,187-192.
  • 5Galtier N,Gouy M,Gautier C.(1996) SEAVIEW and PHYLO_WIN:two graphic tools for sequence alignment and molecular phylogeny.Computer Applications in the Biosciences,12,543-548.
  • 6Gilles A,Lecointre G,Miquelis A,Loerstcher M,Chappaz R,Brun G.(2001) Partial combination applied to phylogeny of European cyprinids using the mitochondrial control region.Molecular Phylogenetics and Evolution,19,22-33.
  • 7Grande L.(1982) A revision of the fossil genus Dipomystus,with comments on the interrelationships of Clupeomorph fishes.American Museum Novitates,2728,1-34.
  • 8Kocher TD,Thomas WK,Meyer A,Edwards SV,Pallablanca FX,Wilson AC.(1989) Dynamics of mitochondrial DNA evolution in animals:amplification and sequencing with conserved primers.The Proceedings of the National Academy of Sciences,USA,86,6196-6200.
  • 9Kreyenberg M,Pappenheim P.(1908) Ein Beitrag zur Kenntnis der Fische der Jangtze und seiner Zuflusse.Sitzungsber Sitzeber.Ges.Naturf.Freunde Berlin.95-109.
  • 10Kumar S,Tamura K,Nei M.(2004) MEGA3:Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment.Briefings in Bioinformatics,5,150-163.

二级参考文献26

  • 1黄晋彪,张雪生.长江口刀鲚资源试析[J].水产科技情报,1989,16(6):173-175. 被引量:24
  • 2袁传宓,林金榜,刘仁华,秦安舲.刀鲚的年龄和生长[J].水生生物学集刊,1978,6(3):285-298. 被引量:42
  • 3马宏伟,宋微波,马洪钢.基于发生学与形态学资料对盾纤目纤毛虫(原生动物,纤毛门)的系统修订[J].动物分类学报,2005,30(4):684-691. 被引量:2
  • 4Welcomme R L. A review of a model for qualitative evaluation of exploitation levels in multi-species fisheries [J].Fisheries Management and Ecology,1999,6(1):1~3.
  • 5长江水系渔业资源调查协作组.长江水系渔业资源[M].北京:海洋出版社,1990..
  • 6鄱阳湖研究编委会.鄱阳湖研究[M].上海:科学技术出版社,1988..
  • 7Mayr E. Systematics and the origin of species[M]. New York: Columbia University Press, 1942. 155-172.
  • 8Mayr E,Linsley E G,Usinger R L.Methods and principles of systematic zoology[M].NewYork,Toronto and London:McGraw Hill Book Company,1953.23-39,123-154.
  • 9李思发.中国淡水养殖鱼类种质资源研究[M].上海:上海科技出版社,1998.181-210.
  • 10Michel Solignac,Monique Monerot,Jean-Claude Mounolou. Concerted evolution of sequence repeats inDrosophila mitochondrial DNA[J] 1986,Journal of Molecular Evolution(1-2):53~60

共引文献234

同被引文献1104

引证文献85

二级引证文献570

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部