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弥漫大B细胞淋巴瘤1号染色体的基因表达分析

Transcriptional Analysis of Chromosome 1 in Diffuse Large B-Cell Lymphoma
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摘要 目的:探讨弥漫大B细胞淋巴瘤(Diffuse Large B-Cell Lymphoma,DLBCL)中1号染色体基因表达情况。方法:采用激光显微切割技术分离临床DLBCL病人淋巴结标本中的淋巴细胞,提取淋巴细胞的mRNA并与表达谱芯片杂交,通过信号扫描、处理后获得表达基因杂交信号强度。每基因设11-20对探针。杂交信号与错配探针对比,扣除背景值后,使用Wilcoxon符号秩和检验选取与错配杂交信号有显著差异的基因作为分析结果(P=0.05)。然后随机选取四个检测到的基因,使用PCR方法检验基因芯片结果的可靠性。结果:成功地从快速冷冻保存的DLBCL标本中提取RNA。使用表达谱芯片进行研究,发现了共316条1号染色体编码的基因在DLBCL细胞中表达。根据胞内定位,基因功能和基因所属的代谢通路三种分类方法对所得基因进行分类分析。基因表达密度分析显示DLBCL中1号染色体上的基因表达情况与编码基因分布情况存在统计学差异。结论:使用表达谱芯片研究了DLBCL中1号染色体上的基因表达情况。 Objective: To explore the profile of expressed genes encoded by chromosome i in lymph node of Diffuse Large B-Cell Lymphoma (DLBCL). Methods: Lymph node of DLBCL was quick-frozen in liquid nitrogen. Lymphoma cells were separated from frozen sections by LCM. The mRNA of the cells from the lymphoma lymph node was marked with biotin and hybridized with expression profile microarray, and the data of expressed genes were obtained. Initial bioinformatics analysis was performed. Results: Using expression profile microarray, 316 genes encoded by chromosome 1 were found expressed in lymphoma lymph node of DLBCL. The detected genes were classified by cellular component, molecular function and biological function. Conclusions: The profile of expressed genes encoded by chromosome 1 in lymphoma lymph node of DLBCL had been explored by using expression profile microarray.
出处 《现代生物医学进展》 CAS 2007年第7期969-972,共4页 Progress in Modern Biomedicine
基金 国家重大基础研究发展项目(973项目)(No.2002CB513100)
关键词 表达谱芯片 弥漫大B细胞淋巴瘤DLBCL 1号染色体 Microarray DLBCL Chromosome 1 Chinese Library Classification
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参考文献16

  • 1GREGORY SG,BARLOW KF,MCLAY KE,et al.The DNA sequence and biological annotation of human chromosome 1[J].Nature,2006,441:315-321.
  • 2ARMTTAGE JO,WEISENBURGER DD.New approach to classifying non-Hodgkin's lymphomas:clinical features of the major histologic subtypes.Non-Hodgkin's Lymphoma Classification Project[J].J Clin Ocol,1998,16(8):2780-2795.
  • 3STIREWALT DL,POGOSOVA-AGADJANYAN EL,KHALID N,et al.Single-stranded linear amplification protocol results in reproducible and reliable microarray data from nanogram amounts of starting RNA[J].Genomics,2004,83(2):321-331.
  • 4BUCKANOVICH RJ,SASAROLI D,O'BRIEN-JENKINS A,et al.Use of immuno-lcm to identify the in situ expression profile of cellular constituents of the tumor microenvironment[J].Cancer Biol Ther,2006,5(6):635-642.
  • 5GENE ONTOLOGY CONSORTIUM.The Gene Ontology(GO)Project In 2006[J].Nucl Acids Res,2006,34:D322-D326.
  • 6LIOLIOS K,TAVERNARAKIS N,HUGENHOLTZ P,et al.The Genomes On Line Database(GOLD)v.2:a monitor of genome projects worldwide[J].Nucleic Acids Res,2006,34(Database Issue):D332-D334.
  • 7MEWES HW,FRISHMAN D,MAYER KF,et al.MIPS:analysis and annotation of proteins from whole genomes in 2005[J].Nucleic Acids Res,2006,34(Database Issue):D169-D172.
  • 8KHIARA AH,MORISCOT AS,FERREIRA PJ,et al.Protecting RNA in fixed tissue:an alternative method for 1cm users[J].J Neurosci Methods,2005,148(2):103-107.
  • 9朱涛,吴明富,周金华,李红雨,徐钢,卢运萍,马丁.卵巢癌肝转移灶高表达基因SFT2D1的生物信息学分析[J].生物磁学,2005,5(4):1-5. 被引量:4
  • 10HE CHENG.The structure? function and activity of SERPIN super-family[J].Foreign Medical Sciences:Molecular Biology,1998,20(1):34-38.

二级参考文献38

  • 1石琳,杜军保,张春雨,闫辉,唐朝枢.气体信号一氧化氮与硫化氢在肺动脉舒张反应中的相互作用[J].中国药理学通报,2004,20(10):1112-1115. 被引量:26
  • 2Kozasa T, Itoh H, Tsukamoto T, et al . Isolation and characterization of the human Gsa gene. Proc Natl Acad Sci USA, 1988, 85 : 2081 -2085.
  • 3Hayward BE, Kamiya M, Strain L, et al. The human GNAS1 gene is imprinted and encodes distinct paternally and biallelically expressed G proteins. Proc Nail Acad Sci USA, 1998, 95 : 10038- 10043.
  • 4Zheng H, Radeva G, McCann JA, et al. Gαs transcripts are biallelically expressed in the human kidney cortex: implications for type pseudohypoparathyroidism type Ⅰ b. J Clin Endocrinol Metab, 2001, 86 : 4627 -4629.
  • 5Williamson CM, Skinner JA, Kelsey G, et al. Alternative non-coding splice variants of Nespas, an imprinted gene antisense to Nesp in the Gnas imprinting cluster. Mamm Genome, 2002, 13 : 74 -79.
  • 6Balcueva EA, Wang Q, Hughes H, et al. Human G protein γ11 and γ14 subtypes define a new functional subclass. Exp Cell Res, 2000, 257 : 310-319.
  • 7Hurowitz EH, Melnyk JM, Chen YJ, et al. genomic characterization of the human heterotrimeric G protein α ,β, and γ subunit Genes. DNA Res, 2000, 7 : 111 -120.
  • 8Watson A J, Aragay AM, Slepak VZ, et al. A novel form of the G protein β subunit Gβ5 is specifically expressed in the vertebrate retina. J Biol Chem, 1996, 271 : 28154 -28160.
  • 9Ray K, Robishaw JD. Cloning and sequencing of a rat heart cDNA encoding a G-protein β subunit related to the human retinal β3 subunit. Gene, 1994, 149 : 337 -340.
  • 10Vuoristo JT, Berrettini WH, Overhauser J, et al. Sequence and genomic organization of the human G-protein Golfalpha gene (GNAL) on chromosome 18p11, a susceptibility region for bipolar disorder and schizophrenia. Mol Psychiatry,2000, 5 : 495 -501.

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