摘要
An important functioning mechanism of biological macromolecules is the transition between different conformed states due to thermal fluctuation. In the present paper, a biological macromolecule is modeled as two strands with side chains facing each other, and its stochastic dynamics including the statistics of stationary motion and the statistics of conformational transition is studied by using the stochastic averaging method for quasi Hamikonian systems. The theoretical results are confirmed with the results from Monte Carlo simulation.
An important functioning mechanism of biological macromolecules is the transition between different conformed states due to thermal fluctuation. In the present paper,a biological macromolecule is modeled as two strands with side chains facing each other,and its stochastic dynamics including the statistics of stationary motion and the statistics of conformational transition is studied by using the stochastic averaging method for quasi Hamiltonian systems. The theoretical results are confirmed with the results from Monte Carlo simulation.
基金
Project supported by the National Natural Science Foundation of China (No.10332030)
the Specialized Research Fund for the Doc- toral Program of Higher Education of China (No.20060335125)
the National Science Foundation for Post-doctoral Scientists of China (No.20060390338)
