期刊文献+

蛋白质亚细胞定位预测的最近邻算法 被引量:1

Nearest neighbour algorithm for predicting protein subcellular location
下载PDF
导出
摘要 基于蛋白质的氨基酸组成,采用三种几何距离,即Euclidean距离、Minkowski距离和广义距离,利用最近邻算法对蛋白质亚细胞定位进行预测。结果表明该方法新颖、简单、有效。 Based on the amino acid composition of the proteins, the nearest neighbour algorithm by using three distance functions,i, e. , Euclidean distance, Minkowski distance and generalized distance, was developed for predicting the protein subcellular location. The results show that such an approach is novel, simple and effective.
作者 宋杰
机构地区 韶关学院数学系
出处 《计算机应用研究》 CSCD 北大核心 2007年第11期30-31,36,共3页 Application Research of Computers
基金 国家自然科学基金资助项目(10571018)
关键词 生物信息学 蛋白质亚细胞定位 氨基酸组成 最近邻算法 bioinformaticS proteins subcellular location amino acid composition nearest neighbour algorithm (NNA)
  • 相关文献

参考文献13

  • 1NAKASHIMA H,NISHIKAWA K.Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies[J].Journal of Molecular Biology,1994,238(1):54-61.
  • 2CEDANO J,ALOY P,PEREZ-PONS J A,et al.Relation between aminoacid composition and cellular location of proteins[J].Journal of Molecular Biology,1997,266(3):594-600.
  • 3REINHARDT A,HUBBARD T.Using neural networks for prediction of the subcellular location of proteins[J].Nucleaic Acid Research,1998,26(9):2230-2236.
  • 4CAI Yu-dong,LIU Xiao-jun,CHOU K C.Artificial neural network model for predicting protein subcellular location[J].Computers and Chemistry,2002,26(2):179-182.
  • 5CHOU K C,ELROD D.Protein subcellular location prediction[J].Protein Engineering,1999,12(2):107-118.
  • 6HUA Su-jun,SUN Zhi-rong.Support vector machine approach for protein subcellular localization prediction[J].Bioinformatics,2001,17(8):721-728.
  • 7YUAN Z.Prediction of protein subcellular locations using Markov chain models[J].FEBS Letters,1999,451(1):23-26.
  • 8FENG Z P,ZHANG C T.Prediction of the subcellular location of prokaryotic proteins based on the hydrophobic index of the amino acids[J].International Journal of Biological Macromolecules,2001,28(3):255-261.
  • 9CHOU K C.Prediction of protein subcellular attributes using pseudoa-mino acid composition[J].Proteins:Structure,Function,and Genetics,2001,43(3):246-255.
  • 10NAKAI K,KANEHISA M.A knowledge base for predicting protein localization sites in eukaryotic cells[J].Genomics,1992,14(4):897-911.

同被引文献1

引证文献1

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部