期刊文献+

Identification of Soybean Genes Involved in Circadian Clock Mechanism and Photoperiodic Control of Flowering Time by In Silico Analyses 被引量:1

Identification of Soybean Genes Involved in Circadian Clock Mechanism and Photoperiodic Control of Flowering Time by In Silico Analyses
原文传递
导出
摘要 Glycine max is a photoperiodic short-day plant and the practical consequence of the response is latitude and sowing period limitations to commercial crops. Genetic and physiological studies using the model plants Arabidopsis thaliana and rice (Oryza sativa) have uncovered several genes and genetic pathways controlling the process, however information about the corresponding pathways in legumes is scarce. Data mining prediction methodologies, including multiple sequence alignment, phylogeneUc analysis, bioinformaUcs expression and sequence motif pattern identification, were used to identify soybean genes involved in day length perception and photoperiodic flowering induction. We have investigated approximately 330 000 sequences from open-access databases and have identified all bona fide central oscillator genes and circadian photoreceptors from A. thaliana in soybean sequence databases. We propose a working model for the photoperiodic control of flowering time in G. max, based on the identified key components. These results demonstrate the power of comparative genomics between model systems and crop species to elucidate the several aspects of plant physiology and metabolism. Glycine max is a photoperiodic short-day plant and the practical consequence of the response is latitude and sowing period limitations to commercial crops. Genetic and physiological studies using the model plants Arabidopsis thaliana and rice (Oryza sativa) have uncovered several genes and genetic pathways controlling the process, however information about the corresponding pathways in legumes is scarce. Data mining prediction methodologies, including multiple sequence alignment, phylogeneUc analysis, bioinformaUcs expression and sequence motif pattern identification, were used to identify soybean genes involved in day length perception and photoperiodic flowering induction. We have investigated approximately 330 000 sequences from open-access databases and have identified all bona fide central oscillator genes and circadian photoreceptors from A. thaliana in soybean sequence databases. We propose a working model for the photoperiodic control of flowering time in G. max, based on the identified key components. These results demonstrate the power of comparative genomics between model systems and crop species to elucidate the several aspects of plant physiology and metabolism.
出处 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2007年第11期1640-1653,共14页 植物学报(英文版)
关键词 circadian clock CRYPTOCHROME data mining FLOWERING PHOTOPERIOD phytochrome. circadian clock cryptochrome data mining flowering photoperiod phytochrome.
  • 相关文献

参考文献74

  • 1Abe J, Xu D, Miyano A, Komatsu K, Kanazawa A, Shimamoto Y (2003). Photoperiod-insensitive Japanese soybean landraces differ at two maturity loci. Crop Sci. 43, 1300-1304.
  • 2Alabadi D, Oyama T, Yanovsky M J, Harmon FG, Mg, s P, Kay SA (2001). Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293, 880-883.
  • 3Alabadi D, Yanovsky M J, Mas P, Harmer SL, Kay SA (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr. Biol. 12, 757-761.
  • 4Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25, 3389-3402.
  • 5Bell-Pedersen D, Cassone VM, Earnest D J, Golden SS, Hardin PE, Thomas TL et al. (2005). Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat. Rev. Genet. 6, 544-556.
  • 6Bernard RL (1971). Two genes for time of flowering and maturity in soybeans. Crop Sci. 11,242-244.
  • 7Blazquez M, Ahn JH, Weigel D (2003). A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat. Genet. 33, 168-171.
  • 8Bonato ER, Vello NA (1999). E6, a dominant gene conditioning early flowering and matur ty n soybeans. Genet. Mol. Biol. 22, 229-232.
  • 9Boss PK, Bastow RM, Mylne JS, Dean C (2004). Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell 16 (suppl.), S18-S31.
  • 10Boylan M, Douglas N, Quail PH (1994). Dominant negative suppression of Arabidopsis photoresponses by mutant phytochrome A sequences identifies spatially discrete regulatory domains in the photoreceptor. Plant Cell 6, 449-460.

同被引文献4

引证文献1

二级引证文献10

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部