期刊文献+

基于28S rDNA序列的姬小蜂科(膜翅目,小蜂总科)分类 被引量:1

DNA TAXONOMY OF EULOPHIDAE USING SEQUENCES OF 28S RDNA
下载PDF
导出
摘要 选择28S rDNA D2区基因,针对GenBank中姬小蜂科总计542条相关序列,借助Blast Align、MUSCLE及TNT等生物信息学软件进行计算分析,提出了一种基于亚科水平的姬小蜂科快速DNA分类鉴定方法。建树结果对目前分类系统中姬小蜂科4亚科分类体系(Bouek,1988)予以支持;综合分析结果基本支持对于姬小蜂亚科以及灿小蜂亚科的分族、分属方法。同时对地位不明的两属Anselmella和Ophelimus的分类学地位提出了假设。 In this paper, we propose an efficient DNA- sequence based procedure to identify insects in the family Eulophidae ( Hymenoptera, Chalcidoidea ). For 542 nudeofide sequences of 28S rDNA D2 region, we utilized BlastAlign, MUSCLE, TNT and other softwares to do series of bioinformafics analyses. Phylogenies support the present 4-subfamily system of the family Eulophidae. Classification of tribes and genera among both Eulophinae and Entedoninae are congruent with those from traditional taxonomy. Besides, the phylogenetic positions of both Anselmella and Ophelimus were inferred, which taxa were previously uncertain in the Eulophidae.
出处 《动物分类学报》 CSCD 北大核心 2008年第2期301-306,共6页 Acta Zootaxonomica Sinica
基金 国家自然科学基金委面上项目(30670242 30500056) 中国科学院创新工程3期 山西省攻关项目(2007031040-1)资助 教育部留学回国人员科研启动基金(061I891135)的资助.
关键词 姬小蜂科 28S RDNA D2区 DNA分类学 Eulophidae, 28S rDNA D2 region, DNA taxonomy.
  • 相关文献

参考文献18

  • 1Belshaw,R.and Katzouraakis,A.2005.BlastAlign:a program that uses blast to align problematic nudeodde sequences.Bioinformatics,21:122-23.
  • 2Blaxter,M.L.2004.The promise of DNA taxonomy.philosophical transactions of the Royal of London.Series B,359:669-679.
  • 3Bou(c)ek,Z.1988.Australasian Chalcidoidea (Hymenopdtera):A Biosystemtic Revision of Fenera of Fourteen Families with a Reclassification of Species.C.A.B.International,United Kingdom.832pp.
  • 4DeSalle,R.and Schierwater,B.1998.Molecular Approaches to Ecology and Evolution.Birkhauser Publishing Ltd.pp196.
  • 5Edgar,R.C.2004.MUSCLE:multiple sequence alignment widx high accuracy and high throughput,Nucleic Acids Research 32 (5):1792-1797.
  • 6Gauthier,N.,LaSalle,J.,Quicke,D.L.J.and Godfray,H.C.J.2000.Phylogeny of Eulophidae (Hymenoptera:Chalcidoidea),with a reclssification of Eulophinae and the recognition that Elasmidae are derived eulophids.Systematic Entomology,25:521-539.
  • 7Goloboff,P.A.1999.Analyzing large data sets in reasonable times:solutions for composite optima.Cladistics,15 (4):415-428.
  • 8Hall,T.1999.BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 951981NT.Nucleic.Acids SymposiumSeries,41:958.
  • 9Hillis,D.M.and Dixon,M.T.1991.Ribosomal DNA:molecular evolution and phylogenetic inference.The Quarterly Review of Biology,66:411-453.
  • 10Kluge,A.G.1989.A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae,Serpentes).Systematic Zoology,,38:7-25.

二级参考文献19

  • 1Belshaw,R.,Fitton,M.,Herniou,E.,Gimeno,C.and Quicke,D.L.J.1998.A phylogenetic reconstruction of the Ichneumonoidea(Hymenoptera) based on the D2 variable region of 28S ribosomal DNA.Systematic Entomology,23:109-123.
  • 2Belshaw,R.and Katzourakis,A.2005.BlastAlign:a program that uses blast to align problematic nucleotide sequences.Bioinformatics,21:122-123.
  • 3Belshaw,R.,Lopez-Vaamonde,C.,Degerli,N.and Quicke,D.L.J.2001.Paraphyletic taxa and taxonomic chaining:evaluating the classification of braconine wasps (Hymenoptera:Braconidae) using 28S D2-3 rDNA sequences and morphological characters.Biological Journal of the Linnean Society,73:411-424.
  • 4Benson,D.A.,Karsch-Mizrachi,I.,Lipman,D.J.,Ostell,J.and Wheeler,D.J.2005.GenBank.Nucleic Acids Research,33:D34-D38.
  • 5Blaxter,M.L.2004.The Promise of DNA Taxonomy.Philosophical Transactions of the Royal Society,359:669-679.
  • 6Bray,N.,Dubchak,I.and Pachter,L.2003.AVID:a global alignment program.Genome Research,13:97-102.
  • 7Campbell,B.,Heraty,J.,Rasplus,J.Y.,Chan,K.,Campbell,J.S.and Babcock,C.2000.Molecular systematics of the Chalcidoidea using 28S-D2 rDNA.In:Austin,A.D.and Dowton,M.(eds.),Hymenoptera:Evolution,Biodiversity and Biological Control.CSIRO,pp.59-73.
  • 8Chen,Y,Xiao,H,Fu,J-Z and Huang,D-W 2004.A molecular phylogeny of eurytomid wasps inferred from DNA sequences of 28S,18S,16S and CO Ⅰ genes.Molecular Phylogenetics and Evolution,31:300-307.
  • 9Gauthier,N.,Lasalle,J.,Quicke,D.L.J.and Godfray,H.C.J.2000.Phylogeny of Eulophidae (Hymenoptera:Chalcidoidea),with a reclassification of Eulophinae and the recognition that Elasmidae are derived eulophids.Systematic Entomology,25 (4):521-539.
  • 10Hall,T.A.1999.BioEdit:A User-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT.Nucleic Acids Symposium Series,41:95-98.

同被引文献22

  • 1凌去非,李思发.鲤科25种鱼类线粒体COⅡ基因序列差异及其系统进化关系[J].水产学报,2006,30(6):747-752. 被引量:15
  • 2松井魁.鳗学[M].东京:恒星社厚生阁株式会社,1972:4-75.
  • 3FUNK D J, OMLAND K E. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA[J]. Annual Review of ecology Evolution and Systemtics, 2003,34:397 - 423.
  • 4CATERINO M S, SPERLING F A H. Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes [J]. Molecular Phylogenetics and Evolution, 1999,11 : 122 - 137.
  • 5HERAS S, CASTRO M G, ROLDXN M I. Mugil curema in Argentinean waters: combined morphological and molecular approach[J]. Aquaculture, 2006, 261(2): 473 -478.
  • 6HEBERT P D N, CYWINSKA A, BALL S L,et al. Biological identifications through DNA barcodes [ J ]. Proceedings of the Royal Society B: Biological Sciences, 2003,270:313 - 321.
  • 7JERMIIN L S, CROZIER R H. The cytochrome b region in mitochondria DNA of the ant Teraponera ruforniger : sequence divergence in Hymenoptera maybe associated with nucleotide content [ J ]. Journal of Molecular Evolution, 1994 (38) : 182 - 194.
  • 8EGE V. A revision of the genus Anguills Shaw,a systematic, phylogenetic and geographical study [ M ]. Dana Report,1939 : 16.
  • 9张春光,唐文乔,刘东,等.中国动物志,硬骨鱼纲,鳗鲡目背棘鱼目[M].北京:科学出版社,2010:175-183.
  • 10WATANABE S, AOYAMA J, TSUKAMOTO K. A new species of freshwater eel Anguilla luzonensis (Teleostei: Anguillidae) from Lnzon Island of the Philippines [ J ]. Fish science, 2009,75 : 387 - 392.

引证文献1

二级引证文献5

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部