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工程化学数据库中分子结构信息的处理 被引量:4

The processing of molecular structure information in ECDB
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摘要 工程化学数据库(ECDB)中,分子结构信息的存储、子结构检索和图形显示查询结果是实现结构数据库功能的基础。本文就研究这三问题,在数据存储方面设计了按MOL文件结构的特殊存储方法,压缩大量存储;在子结构检索方面,改进VF2算法的效率;开发图形显示模块,设计子结构检索平台。 The storage, substructure-searching, and the molecular structure drawing are the basic functions for the Engineering Chemical Database(ECDB). In this paper, the three problems are discussed. First, a special storage method for MOL format was presented,which compressed large amount of storage. Second, we carried through some analysis on the efficiency of the VF2 algorithm, as well as some improvement. Third, a module of molecular structure drawing was developed; while a sub-structure matching system was designed and actualized.
出处 《计算机与应用化学》 CAS CSCD 北大核心 2008年第9期1152-1158,共7页 Computers and Applied Chemistry
基金 中国科学院科学数据库及其信息系统(INF105-SDB-1-01)的支持。
关键词 分子结构数据库 MOL文件 子结构检索 结构显示 VF2算法 molecular structure database, MOL format, VF2 algorithm, substructure search
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  • 1MDL Information Systems Inc. http://www. mdli. com/.
  • 2MDL CTfile formats. http ://www. mdli. com/downloads/ctfite/ctfile _ subs. html.
  • 3OpenBabel. http ://openbabel. soureeforge. net/wiki/Main _ Page.
  • 4http://ce. sysu. edu. cn/ChemiPublic/Newa/200f05/ChemiPublic -200605111545111. html. 2006 -05 - 11.
  • 5http ://www. cas. org/aboutcas/index. html.
  • 6ISIS/Base. http://www. mdli. com/products/framework/isisbase/index. jsp.
  • 7Smith EG. The Wiswesser Line-Formula Chemical Notation. New York : McGraw-Hill, 1968.
  • 8Smith EG, Baker PA and William J. The Wiswesser Line-Formula Chemical Notation (WLN). Cherry Hill NJ:Chemical Information Management Inc, 1976.
  • 9Weininger D. SMILES. A chemical language and information system 1. introduction to methodology and encoding rides. J Chem lift Comput Sci, 1988, 28:31 -36.
  • 10Bamard JM, Jochum CJ and Welford SM. ROSDAL: A Universal Representation for PC-host communication In:Warr W A eds. Chemical Structure Information:Interface, Communication and Standards. edition. Washington: American Chemical Society, 1989:76 -81.

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  • 1束志恒,陈德钊,陈亚秋.粗糙集方法及其在化学模式分类规则挖掘中的应用[J].分析化学,2004,32(7):879-883. 被引量:6
  • 2Rijnbeek, M.; Steinbeck, C. J. Cheminf 2009, 1, 17.
  • 3Worlein, M. Extension and Parallelization of a Graph-Mining-Algorithm. Ph.D. Dissertation, Friedrich-Alexander-Universitat Erlangen-Niirnberg, German3 2006.
  • 4Meinl, T.; Borgelt, C.; Berthold, M. R. Discriminative Closed Fragment Mining and Perfect Extensions in MoFa. In Frontiers in Artificial Intelligence and Applications; Onaindia, E., Staab, S. Eds.; lOS Press: Amsterdam, 2004; Vol. 109, pp 3-14.
  • 5Huan, J.; Wang, W.; Prins, J. Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. In Proceedings of the 3rd IEEE International Conference on Data Mining, Melbourne, FL, USA, Nov 19-22, 2003; Wu, X. D., Tuzhilin, A., Shavlik, J. Eds.; IEEE Computer Soc.: Los Alamitos, CA, 2003.
  • 6Yan, X. F.; Han, J. W. gSpan: Graph-Based Substructure Pattern Mining. In Proceedings of 2002 IEEE International Conference on Data Mining, Maebashi City, Japan, Dec 9-12, 2002;Kumark, V. Ed.; IEEE Computer Soc.: Los Alamitos, CA, 2002.
  • 7Nijssen, S.; Kok, J. N. Electronic Notes in Theoretical Computer Science 2005- 127 (1), 77.
  • 8Rahman, S. A.; Bashton, M.; Holliday, G. L.; Schrader, R.; Thornton, J. M. J. Cheminf 2009, 1, 12.
  • 9Sastre, G.; Vidal-Moya, J. A.; Blasco, T.; Rius, J.; Jorda, J. L.; Navarro, M. T.; Rey, F.; Corma, A. Angew. Chem. Int. Edit. 2002, 41, 4722.
  • 10Corma, A.; Rey, F.; Valencia, S.; Jorda, J. L.; Rius, J. Nature Mater. 2003, 2, 493.

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