期刊文献+
任意字段
题名或关键词
题名
关键词
文摘
作者
第一作者
机构
刊名
分类号
参考文献
作者简介
基金资助
栏目信息

A Multi-level Disambiguation Framework for Gene Name Normalization 被引量：1

A Multi-level Disambiguation Framework for Gene Name Normalization
下载PDF
导出
作者 SUN Cheng-Jie WANG Xiao-Long LIN Lei LIU Yuan-Chao
机构地区 School of Computer Science
出处 《自动化学报》 EI CSCD 北大核心 2009年第2期193-197,共5页 Acta Automatica Sinica
基金 Supported by National High Technology Research and Development Program of China （863 Program） （2006AA01Z197, 2007AA01Z172） and National Natural Science Foundation of China （60673019, 60435020）
关键词 肾炎 基因 复杂系统 医学文本 数据挖掘 Gene name normalization （GN）, maximum entropy model, semantic similarity
分类号 Q78 [生物学—分子生物学]
  • 相关文献

参考文献22

  • 1Jensen L J, Saric J, Bork P. Literature mining for the biologist: from information retrieval to biological discovery. Nature Reviews Genetics, 2006, 7(2): 119-129.
  • 2Nenadic (], Spasic I, Ananiadou S. Terminology-driven mining of biomedical literature. Bioinformatics, 2003, 19(8): 938-943.
  • 3Morgan A A, Hirschman L, Colosimo M, Yeh A S, Colombe J B. Gene name identification and normalization using a model organism database. Journal of Biomedical Informatics, 2004, 37(6): 396-410.
  • 4Yetisgen-Yildiz M, Pratt W. Using statistical and knowledge-based approaches for literature-based discovery. Journal of Biomedical Informatics, 2006, 39(6): 600-611.
  • 5Fang H, Murphy K, Jin Y, Kim J S, White P S. Human gene name normalization using text matching with automat- ically extracted synonym dictionaries. In: Proceedings of the BioNLP Workshop on Linking Natural Language Processing and Biology at HLT-NAACL. New York, USA: New York Universitv. 2006. 41-48.
  • 6Hirschman L, Colosimo M, Morgan A A, Yeh A. Overview of biocreative task lb: normalized gene lists. BMC Bioinformatics, 2005, 6(1): 11.
  • 7Morgan A A, Hirschman L. Overview of biocreative II gene normalization. In: Proceedings of the 2nd BioCreative Challenge Evaluation Workshop. Madrid, Spain: CNIO, 2007. 17-28.
  • 8Tamames J, Valencia A. The success (or not) of hugo nomenclature. Genome Biology, 2006, 7(5): 402.
  • 9Hanisch D, Fundel K, Mevissen H, Zimmer R, Fluck J. Prominer: rule-based protein and gene entity recognition. BMC Bioinformatics, 2005, 6(1): 14.
  • 10Crim J, McDonald R, Pereira F. Automatically annotating documents with normalized gene lists. BMC Bioinformatics 2005, 6(1): 13.

同被引文献5

  • 1LI Yan-peng,LIN Hong-fei,YANG Zhi-hao. Incorporating rich background knowledge for gene named entity classification and recognition[J]. BMC Bioinformatics, 2009,10 ( 1 ) : 223.
  • 2SAHAMI M,HEILMAN T D. A web-based kernel function for measuring the similarity of short text snippets[C]// Proceedings of the 15th international conference on World Wide Web. New York:ACM ,2006:377-386.
  • 3LIU Hong-fang,TORII M,HU Zhang-zhi ,et al. Gene mention and gene normalization based on machine learning and online resources[C]//Proe of the Second BioCreative Challenge Workshop Madrid. Spain:CNIO,2007:135-140.
  • 4SCHUEMIE M J,JELIER R,KORS J A. Peregrine :lightweight gene name normalization by dictionary lookup[C]// Proc of the Second BioCreative Challenge Evaluation Workshop Madrid. Spain:CNIO,2007:131-133.
  • 5KUO Cheng-ju,CHANG Yu-ming,HUANG Han-sen,et al. Exploring match scores to boost precision of gene normalization[C]//Proc of the Second BioCreative Challenge Evaluation Workshop Madrid. Spain :CNIO, 2007: 161-163.

引证文献1

二级引证文献1

自动化学报
2009年 第2期

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部