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一种基于核苷酸二联体的DNA序列编码规则 被引量:1

Coding Method Based on Dual Nucleotides of the DNA Sequence
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摘要 序列比较的基本任务有:(1)对于两条长度相近的序列相似,找出序列的差别;(2)判断一条序列的前缀与另一条序列的后缀相似;(3)判断一条序列是否是另一条序列的子序列;(4)判断两条序列中是否有非常相似的子序列。对核苷酸二联体给出DNA序列一种编码规则,利用异或操作进行序列比较。 quences; (2) The basic task of the sequence comparison is : ( 1 ) to distinguishing the difference between two seto judge the prefix of a sequence matches the suffix of the other sequence; (3) to judge two sequences have common subsequences; (4) to judge a sequence is the subsequence of another sequence. A coding method is proposed based on dual nucleotides of the DNA sequence and made sequence comparison based on exclusive-or operation.
作者 李刚成 龙凯
出处 《科学技术与工程》 2009年第9期2453-2456,共4页 Science Technology and Engineering
关键词 DNA序列 核苷酸二联体 异或 序列分析 DNA sequence dual nucleotides exclusive-OR operation sequence analysis
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  • 1Randic M. A novel 2-D graphical representation of DNA sequences of low degeneracy. Chemical Physics Letter, 2001 ;350 : 106-112.
  • 2Raychaudhury C, Nandy A. Indexing scheme and similarity measures for macromolecular sequences. J Chem Inf Comput Sci, 1999 ; 39 : 243 -247.
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  • 5Liao Bo, Wang Tianming. New 2D graphical representations of DNA sequences. J Comput Chem, 2004 ;25 : 1364-1368.
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  • 9Liao Bo. 3-D graphical representation of DNA sequences and their numerical characterization. Journal of Molecular Structure, 2004; 681:209-212.
  • 10Yuan Chunxin ,Liao Bo ,Wang Tianming. New 3D graphical representations of DNA sequences and their numerical characterization. Chemical Physics Letters, 2003 ;379:412-417.

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