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拟南芥基因组NBS-LRR类基因家族的生物信息学分析 被引量：9

Bioinformatic Analysis of the NBS-LRR Gene Family in Arabidopsis thaliana
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摘要 【研究目的】对拟南芥(Arabidopsis thaliana)中含有核苷酸结合位点(Nucleotide binding site,NBS)和富含亮氨酸的重复序列(Leucine-richrepeat,LRR)类基因进行了分析。【方法】利用TAIR、Pfam网站,数据库和Chromosome Map Tool、MEGA3.0、ClustalX软件,分析确定NBS-LRR基因及其类型、染色体物理分布、系统发育学关系。【结果】在拟南芥全基因组中共有204个NBS-LRR类基因,大多位于1号和5号染色体上,其中71.6%的NBS-LRR类基因分布在基因簇内。对NBS-LRR类基因家族进行了氨基酸多序列比对和系统进化树分析,NBS-LRR类基因家族可分为四个亚家族。另外,NBS-LRR基因在进化过程中存在较多的复制现象。 [OBJECTIVE]A full set of disease resistance candidate genes encoding NBS-LRR in a complete genome ofArabidopsis thaliana were analyzed. [METHOD] Structural diversities, physical positions, and phylogenetic relationship were studied by TAIR and Pfam web, database, Chromosome Map Tool, MEGA 3.0 and ClustalX software. [RESULTS] 204 genes containing NBS domain were found in genome and most of those were located in 1 and 5 chromosome. The NBS-LRR family genes on different chromosomes exist in the form of monogenic gene or gene clusters, and 71.6% of the NBS-LRR genes were located in gene clusters. That showed there are much copy phenomenons in the evolution of disease resistance genes ofArabidopsis thaliana.
作者 王岩 李兆阳 唐心龙 卢姗 许鹏 张静 方奎 席景会
机构地区 吉林大学植物科学学院
出处 《中国农学通报》 CSCD 北大核心 2009年第15期40-45,共6页 Chinese Agricultural Science Bulletin
关键词 拟南芥 生物信息学 基因家族 NBS—LRR Arabidopsis thaliana, bioinformatics, gene-family, NBS-LRR
分类号 S432.23 [农业科学—植物病理学]
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参考文献15

  • 1Gassmann W,Hinsch ME,Staskawicz BJ.The Arabidopsis RPS4 bacterial resistance gene is a member of the TIR-NBS-LRR family of disease resistance genes[J].Plant J,1999,20(3):265-277.
  • 2Mondragon-Palomino M,Meyers BC,Michelmore RW,et al.Patterns of positive selection in the complete NBS-LRR gene family of arabidopsis thaliana[J].Genome Res 2002,(12):1305-1315.
  • 3Meyers BC,Kaushik S,Nandety RS.Evolving disease resistance genes[J].Curr Opin Pleat Blot,2005,8(2):129-134.
  • 4Arabidopsis Genome Initiative.Analysis of the genome sequence of the flowering plant Arabidopsis thaliana[J].Nature,2000,408:796-815.
  • 5孙学辉,路铁刚,贾士荣,黄大昉.水稻中富含亮氨酸的重复序列和核苷酸结合位点(LRR-NBS)基因家族的生物信息学分析[J].中国农业科学,2004,37(1):1-7. 被引量：7
  • 6Bai J,Pennill LA,Ning J,et al.Diversity in Nucleotide Binding Site-Leucine-Rich Repeat Genes in Cereals[J].Genome Res,2002,12:1871-1884.
  • 7Holub EB.Arms race is ancient history in Arabidopsis,the wildflower[J].Nat Rev Genet,2001,2(7):516-527.
  • 8Xiao S,Brown S,Patrick E,et al.Enhanced Transcription of the Arabidopsis Disease Resistance Genes RPW8.1 and RPW8.2 via a Salicylic Acid-Dependent Amplification Circuit Is Required for Hypersensitive Cell Death[J].Plant Cell,2003,15:33-45.
  • 9Dong JX,Chen CH,Chen ZX.Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response[J].Plant Mol Biol,2003,51(1):21-37.
  • 10Meyers BC,Morgante M,Michelmore W.TIR-X and TIR-NBS proteins:Two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes[J].Plant Journal,2002,32(1):77-92.

二级参考文献12

  • 1Flor H. Current status of the gene-for-gene concept. Annual Review of Phytopathology, 1971,9 : 275 - 296.
  • 2Hulbert S H, Webb C A, Smith S M, Sun Q, Resistance gene complexes: Evolution and utilization. Annual Review of Phytopctthology,2001,39:285 - 312.
  • 3Meyers C, Morgame M, Miehelmore W. TIR-X and TIR NBS proteins: Two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant Journol, 2002, 32 : 77 - 92.
  • 4Goff S A, Ricke D, Lan T H, Presting G, Wang R, Dunn M,Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange B M, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M,Sun W L, Chen L, Cooper B, Park S, Wood T C, Mao L, Quail P,Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S,Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S,Mitchell J, Eldredge G, Scholl T, Miller R M, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R. Feldhaus J, Macalma T,Oliphant A, Briggs S. A draft sequence of the rice genome ( Oryzasativa L ssp Japonica). Science, 2002, 296(5 565):92- 100.
  • 5Jia Y, et al. Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO Journal, 2000, 19:4004-4014.
  • 6Dangl L, Jones G. Plant pathogens and integrated defence responses to infection. Nature, 2001, 411:826-833.
  • 7Kobe B, Kajava V. The leueine-rich repeat as a protein recogonition motif. Current Opinion Structure Biology, 2001,11 : 725 - 732.
  • 8van der Biezen E, Jones J. The NB-ARC domain: A novel signaling motif shared by plant resistance gene products and regulators of cell death in animals. Current Biology, 1998, 8:226- 227.
  • 9Yu J, Hu S, Wang J, Wong G K, Li S, Liu B, Deng Y, Dai L,Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Hart Y, Li L, IA W,Hu G, Huang X, Li W, Li J, Liu Z, IA L, Liu J, Qi Q, Liu J, LiL, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W,RenX, FengX, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z,Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, ZengW, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W,Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, LiP, Chen W, Wang X, Zhang Y, Hu J,Wang J, Liu S, Yang J,Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B,Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L,Yuan L, Yang H. A draft sequence of the rice genome ( Oryza sativa L ssp Indica). Science, 2002, 296(5 565):79-92.
  • 10Bateman A, Birney E, Durbin R, Eddy S R, Howe K L, Sonnhammer E L. The Pfam protein families database. Nucleic Acids Research, 2000,28 (1) :263 - 266.

共引文献6

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引证文献9

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中国农学通报
2009年 第15期

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