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Characterization of expressed sequence tags obtained by SSH during root formation in Larix cuttings

Characterization of expressed sequence tags obtained by SSH during root formation in Larix cuttings
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摘要 SSH was used to analyze gene transactivation during root formation of Larix cuttings. Two subtractive cDNA libraries were constructed from clone 31-6 as tester or driver and clone 15-4 as driver or tester. The SSH PCR products from the libraries were cloned into a pGEM-T easy vector and after PCR and dot blot analysis, positive clones were selected, sequenced and compared to the database in GenBank with BLASTX. The results of a sequence assembly in two libraries show that 521 UniEST (expressed sequence tag) were obtained. These 521 UniEST belong to metabolism, signal pathways, transport, resistance, developmental processes, local- ization, unknown proteins and "no hits found". All of these suggest that subtractive cDNA libraries during root formation of Larix cuttings were constructed successfully. SSH was used to analyze gene transactivation during root formation of Larix cuttings. Two subtractive cDNA libraries were constructed from clone 31-6 as tester or driver and clone 15-4 as driver or tester. The SSH PCR products from the libraries were cloned into a pGEM-T easy vector and after PCR and dot blot analysis, positive clones were selected, sequenced and compared to the database in GenBank with BLASTX. The results of a sequence assembly in two libraries show that 521 UniEST (expressed sequence tag) were obtained. These 521 UniEST belong to metabolism, signal pathways, transport, resistance, developmental processes, local- ization, unknown proteins and "no hits found". All of these suggest that subtractive cDNA libraries during root formation of Larix cuttings were constructed successfully.
出处 《Forestry Studies in China》 CAS 2010年第3期137-141,共5页 中国林学(英文版)
基金 supported by the National S&T Support Projects for the 11th Five-Year Plan (2006BA-D01A14) the National High-Tech "863" Program of China (2006AA100109) the National "973" Program (2009CB119107)
关键词 suppression subtractive hybridization (SSH) Larix cuttings root formation suppression subtractive hybridization (SSH), Larix cuttings, root formation
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参考文献14

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