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基于Web的PSE-Bio交互式可视化 被引量:1

Web-based interactive visualization of PSE-Bio
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摘要 PSE-Bio是一个基于Web服务面向生物信息学的问题求解平台。为了方便用户仅使用浏览器就能分析调用服务返回的结果,采用SVG技术实现基于WEB的可视化,设计了面向对象的统一可视化数据对象以封装调用不同Web服务返回的消息;设计了面向对象的可视化图形对象以利于交互可视化的实现;并用SVG脚本语言实现了用户与图形的交互以及可视化结果与服务的交互。实验结果表明,基于SVG的可视化方案能够满足生物信息数据的Web可视化需求。 PSE-Bio is a web service-based PSE for bioinformatics.To facilitate users to analyze various service invocation resuits with only the web browser, SVG is used to implement visualization,an object oriented uniform visualization data object is designed to encapsulate various messages returned after the invoking of web service,an-object oriented visualization graph- ic object is designed to facilitate interactive layout, SVG script language is used to implement the interactive layout between users and the final graphics and to make the visualization results interact with service again directly from the SVG page. The experiment is done in the end to indicate that this SVG-based solution is suitable for the web-based visualization of bioinformatics.
出处 《计算机工程与应用》 CSCD 北大核心 2010年第31期77-79,共3页 Computer Engineering and Applications
基金 江苏省自然科学基金No.BK2007041 上海市重点学位建设项目No.J50103~~
关键词 交互 PSE-Bio 可视化 WEB 可扩展矢量图形(SVG) interactive PSE-Bio visualization Web Scalable Vector Graphics(SVG)
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参考文献6

  • 1Xie Jiang, Zhang Xiaobin, Zhang Wu.PSE-Bio: A grid enabled problem solving environment for bioinformatics[C]//Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007) ,2007: 529-535.
  • 2Xie Jiang, Zhang Yiwen, Zhang Wu, et al.Studies of agent composition model of PSE-Bio workflow[C]//2008 Fourth IEEE International Conference on eScience, 2008: 743-748.
  • 3Official website for SVG[EB/OL].http://www.w3.org/Graphics/SVG/.
  • 4Official website for Intact[EB/OL].http://www.ebi.ac.uk/intact/.
  • 5李松倍,谢江,张武,武频.蛋白质相互作用网络的相似子网搜索问题研究[J].计算机工程与应用,2010,46(3):33-35. 被引量:2
  • 6陈郑伟,彭岩,庄力可.基于Ajax的电子政务平台的研究与应用[J].计算机工程与应用,2007,43(5):196-199. 被引量:17

二级参考文献21

  • 1孙志国.Web2.0,以个人为中心的互联网时代的到来[J].农业网络信息,2005(12):97-98. 被引量:24
  • 2梁治.蛋白质相互作用网络的比较生物学分析及其应用[R].合肥:中国科学技术大学,2006.
  • 3Kelley B P,Yuan Bingbing,Lewitter F,et al.Pathblast-A tool for alignment of protein interaction networks[J].Nucleie Acids Research, 2004,32 : 83-88.
  • 4Sharan R,Suthram S,Kelley R M,et al.Conserved patterns of protein interaction in multiple species[J].PNAS,2005,102(6):1974- 1979.
  • 5Pinter R Y,Rokhlenko O,Yeger-Lotem E,et al.Alignment of metabolic pathways[J].Bioinformatics, 2005,21 (16) : 3401-3408.
  • 6Shlomi T,Segal D,Ruppin E,et al.Qpath-A method for querying pathways in a protein-protein interaction network[J].BMC Bioinformatics, 2006,7 : 199.
  • 7Li Zhenping,Zhang Shihua,Wang Yong,et al.Alignment of molecular networks by integer quadratic programming[J].Bioinformatics, 2007,23:1631-1639.
  • 8Ferro A,Giugno R,Pigola G,et aI.Net match-A Cytoscape plugin for searching biological networks[J].Bioinformatics, 2007,23 (7) : 910- 912.
  • 9Sjolander K.Phylogenomic inference of protein molecular function[J]. Bioinformatics, 2004,20:170-179.
  • 10Ahschul S F,Gish W,Miller W,et al.Basic local alignment search tool[J].Journal of Molecular Biology, 1990,215:403-410.

共引文献17

同被引文献30

  • 1俞艳,郭庆胜,何建华,刘玉春.基于Web服务的土地适宜性评价PSE设计与实现[J].武汉大学学报(信息科学版),2006,31(6):544-547. 被引量:5
  • 2HESPER B~ HOGEWEG P. Bioinformatica: een werk concept [J]. Kameleon, 1970, 1(6): 28-29.
  • 3GALLOPOULOS E, HOUSTIS E, RICE J R. Computer as Thinker/Doer: problem-solving environments for computational science [J]. IEEE Computational Science and Engineering, 1994, 2(1): 11-23.
  • 430ONMEE C, KAWATA S. Computer-assisted simulation environment for partial-differential-equation problem, 1. data structure and steering of problem solving process [J]. Transactions of the Japan Society for Computational Engineering and Science, Paper No. 19980001, 1998.
  • 5BOONMEE C, KAWATA S. Computer-assisted simulation environment for partial-differential-equation problem, 2. Visualization and steering of problem solving process [J]. Transactions of the Japan Society for Computational Engineering and Science, Paper No. 19980002, 1998.
  • 6KAWATA S, BOONMEE C. Visual steering of the simulation process in a scientific numerical simulation environment NCAS [J]. Enabling Technologies for Computational Science, 2000, 548: 291-300.
  • 7MUM. PDE mart: a network-based problem solving environment for PDEs [J]. ACM Trans Mathematical Software, 2005, 31(4): 508-531.
  • 8MAO G Y, Mu M. Grid-based PDE. Mart: a PDE- oriented PSE for grid computing [C]// The 1st International Conference on e-Science and Grid Computing. 2005: 464-469.
  • 9KOBASHI H, KAWATA S. PSE park: a framework to construct problem solving environments [C]//The 12th PSE Workshop. 2009.
  • 10AKARSU E, FOX G C, FURMANSKI W. Webflow-high- level programming environment and visual authoring toolkit for high performance distributed computing [C]// ACM/IEEE conference on Supercomputing. 1998: 1-7.

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