Identifying cooperative transcription factors by combining ChiP-chip data and knockout data
Identifying cooperative transcription factors by combining ChiP-chip data and knockout data
基金
This work was supported by the National Basic Research Program of China (Grant Nos. 2009CB918404 and 2006CB910700), International S&T Cooperation Program of China (Grant No. 2007DFA31040) and the National Natural Science Foundation of China (Grant Nos. 30700154 and 31070746).
参考文献12
-
1Banerjee N, Zhang MQ. Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res 2003; 31:7024-7031.
-
2Nagamine N, Kawada Y, Sakakibara Y. Identifying cooperative transcriptional regulations using protein-protein interactions. Nucleic Acids Res 2005; 33:4828-4837.
-
3Yu X, Lin J, Masuda T, et al. Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae. Nucleic Acids Res 2006; 34: 917 - 927.
-
4Harbison CT, Gordon DB, Lee TI, et al. Transcriptional regulatory code of a eukaryotic genome. Nature 2004; 431:99-104.
-
5Hu Z, Killion P J, Iyer VR. Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 2007; 39:683-687.
-
6Cheng H, Jiang L, Wu M, Liu Q. Inferring transcriptional interactions by the optimal integration of ChiP-chip and knockout data. Bioinform Biol Insights 2009; 3:129-140.
-
7Fisher RA. Statistical Methods for Research Workers. Edinburgh: Oliver and Boyd, 1970.
-
8Boban M, Ljungdahl PO. Da181 enhances Stp1- and Stp2- dependent transcription necessitating negative modulation by inner nuclear membrane protein Asil in Saccharomyces cerevisiae. Genetics 2007; 176:2087-2097.
-
9Sil AK, Alam S, Xin P, et al. The Gal3p-Gal80p-Gal4p transcription switch of yeast: Gal3p destabilizes the Gal80p-Gal4p complex in response to galactose and ATP. Mol Cell Biol 1999; 19:7828-7840.
-
10Teixeira MC, Dias P J, Simoes T, Sa-Correia I. Yeast adaptation to mancozeb involves the up-regulation of FLR1 under the coordinate control ofYapl, Rpn4, Pdr3, and Yrr1. Biochem Biophys Res Commun 2008; 367:249-255.
-
1敖世洲.真核基因转录的调节控制[J].生命的化学,1992,12(3):1-3. 被引量:1
-
2刘铁刚,邵荣光.雄激素受体对真核基因转录的调控[J].生命的化学,2002,22(5):400-403. 被引量:1
-
3杨其伟.二聚体参与真核基因转录调节研究的新进展[J].天津师大学报(自然科学版),1994,14(2):59-62.
-
4孟祥宗,许政暟,宋任涛.真核基因转录的分子机制——2006诺贝尔化学奖简介[J].自然杂志,2006,28(6):329-332.
-
5章正琰,薛社普.真核基因转录与染色质修饰机制及转录因子间的关系[J].细胞生物学杂志,2000,22(1):18-22. 被引量:1
-
6李明义,贾弘.蛋白质-DNA相互作用与真核基因转录[J].生物化学与生物物理进展,1995,22(1):13-18.
-
7贾弘禔.真核基因转录的调节[J].生理科学进展,1993,24(4):298-302. 被引量:1
-
8沈.真核基因转录机制研究的进展──1993年美国冷泉港会议简介[J].生物工程进展,1994,14(1):18-22.
-
9王科俊,吕俊杰,冯伟兴,王鑫.可变剪接与疾病的生物信息学研究概况[J].生命科学研究,2011,15(1):86-94. 被引量:10
-
10程炜中,余其兴.真核基因转录的负调控机理[J].国外医学(分子生物学分册),1994,16(4):156-161.