期刊文献+

Quantitative structure-activity relationship of compounds binding to estrogen receptor β based on heuristic method 被引量:3

Quantitative structure-activity relationship of compounds binding to estrogen receptor β based on heuristic method
原文传递
导出
摘要 Estrogen compounds may pose a serious threat to the health of humans and wildlife.The estrogen receptor (ER) exists as two subtypes,ERβ and ERβ.Compounds might have different relative affinities and binding modes for ERβ and ERβ.In this study,the heuristic method was performed on 31 compounds binding to ERβ to select 5 variances most related to the activity (LogRBA) from 1524 variances,which were then employed to develop the best model with the significant correlation and the best predictive power (r2 = 0.829,qL2OO = 0.742,rp2red = 0.772,qe2xt = 0.724,RMSEE = 0.395) using multiple linear regression (MLR).The model derived identified critical structural features related to the activity of binding to ERβ.The applicability domain (AD) of the model was assessed by Williams plot. Estrogen compounds may pose a serious threat to the health of humans and wildlife. The estrogen receptor (ER) exists as two subtypes, ERα and ERβ. Compounds might have different relative affinities and binding modes for ERα and ERβ. In this study, the heuristic method was performed on 31 compounds binding to ERβ to select 5 variances most related to the activity (LogRBA) from 1524 variances, which were then employed to develop the best model with the significant correlation and the best predictive power (γ^2 = 0.829, q^2LOO = 0.742, γ^2pred = 0.772, q^2ext = 0.724, RMSEE = 0.395) using multiple linear regression (MLR). The model derived identified critical structural features related to the activity of binding to ERβ. The applicability domain (AD) of the model was assessed by Williams plot.
出处 《Science China Chemistry》 SCIE EI CAS 2011年第1期237-243,共7页 中国科学(化学英文版)
基金 supported by the Science and Technology Development Foundation Key Project of Nanjing Medical University (09NJMUZ16)
关键词 雌激素受体 启发式方法 受体结合 化合物 定量构效关系 多元线性回归 野生动物 预测能力 estrogen receptor β(ERβ), quantitative structure-activity relationship (QSAR), heuristic method, applicability domain
  • 相关文献

参考文献24

  • 1YANG XuShu,WANG XiaoDong,LUO Si,JI Li,QIN Liang,LI Rong,SUN Cheng,WANG LianSheng.3D-QSAR and docking studies of estrogen compounds based on estrogen receptor β[J].Science China Chemistry,2009,52(7):1042-1050. 被引量:1
  • 2YANG XuShu,WANG XiaoDong,JI Li,LI Rong,SUN Cheng,WANG LianSheng.Combining docking and comparative molecular similarity indices analysis (COMSIA) to predict estrogen activity and probe molecular mechanisms of estrogen activity for estrogen compounds[J].Chinese Science Bulletin,2008,53(23):3626-3633. 被引量:4
  • 3JI Li,WANG XiaoDong,YANG XuShu,LIU ShuShen,WANG LianSheng.Back-propagation network improved by conjugate gradient based on genetic algorithm in QSAR study on endocrine disrupting chemicals[J].Chinese Science Bulletin,2008,53(1):33-39. 被引量:7
  • 4Xing L,Welsh WJ,Tong W,Perkins R,Sheehan DM.Comparison of estrogen receptor and subtypes based on comparative molecular field analysis (CoMFA). Sar Qsar Environ Res . 1999
  • 5Kurunczi L,Seclaman E,Oprea TI,Crisan L,Simon Z.MTD-PLS: A PLS variant of the minimal topologic difference method. III. Map- ping interactions between estradiol derivatives and the alpha estro-genic receptor. J Chem Inf Model . 2005
  • 6R. J. Kavlock,G. P. Daston,C. Derosa,P. Fenner-Crisp,L. E. Gray,S. Kaattary,G. Lucier,M. Luster,M. J. Mac,C. Maczka,R. Miller,J. Moore,R. Rolland,G. Scott,D. M. Sheehan,T. Sink,H. A. Tilson.Research needs for the risk assessment of health and environmental effects of endocrine disruptors: A report of the U.S. EPA-sponsored workshop. Journal of Environmental Health . 1996
  • 7Liu,H.,Papa,E.,Gramatica,P.QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles. Chemical Research in Toxicology . 2006
  • 8Marini,F.,Roncaglioni,A.,Novic,M.Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders. J Chem Inf Model . 2005
  • 9Asikainen,A.,Ruuskanen,J.,Tuppurainen,K.Consensus kNN QSAR: A versatile method for predicting the estrogenic activity of organic compounds in silico. A comparative study with five estrogen receptors and a large, diverse set of ligands. Environmental Science and Technology . 2004
  • 10Kuiper G G,Carlsson B,Grandien K,et al.Comparison of the ligand binding specificity and transcript tissue distribution of estrogen receptor alpha and beta. The Journal of Endocrinology . 1997

二级参考文献33

  • 1XIAO DONG.Mirage[J].China Today,2005,54(2):68-69. 被引量:5
  • 2Kavlock R J,Daston G P,Derosa C,et al.Research needs for the risk assessment of health and environmental effects of endocrine disrupters: a reportof the US EPA-sponsored workshop. Journal of Environmental Health . 1996
  • 3Shi L M,Fang H,Tong W,Wu J,Perkins R,Blair R M,Branham W S,Dial S L,Moland C L,Sheehan D M.QSAR models using a large diverse set of estrogens. Journal of Chemical Information and Computer Sciences . 2001
  • 4Liu H,Papa E,Gramatica P.QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD princi-ples. Chemical Research in Toxicology . 2006
  • 5Marini F,Roncaglioni A,Novic M.Variable selection and interpreta-tion in structure-affinity correlation modeling of estrogen receptor binders. J Chem Inf Model . 2005
  • 6Asikainen,A.,Ruuskanen,J.,Tuppurainen,K.Consensus kNN QSAR: A versatile method for predicting the estrogenic activity of organic compounds in silico. A comparative study with five estrogen receptors and a large, diverse set of ligands. Environmental Science and Technology . 2004
  • 7Kuiper,GG,Enmark,E,Pelto-Huikko,M,Nilsson,S,Gustafsson,JA.Cloning of a novel receptor expressed in rat prostate and ovary. Proceedings of the National Academy of Sciences of the United States of America . 1996
  • 8Roncaglioni A,Benfenati E.In silico-aided prediction of biological properties of chemicals:Oestrogen receptor-mediated effects. Chemical Society Reviews . 2008
  • 9Suzuki T,Ide K,Ishida M,Shapiro S.Classification of Environmental Estrogens by Physicochemical Properties Using Principal Component Analysis and Hierarchical Cluster Analysis. Journal of Chemical Information and Computer Sciences . 2001
  • 10Ghafourian T,Cronin M T D.The impact of variable selection on the modeling of oestrogenicity. Sar Qsar Environ Res . 2005

共引文献9

同被引文献20

  • 1Kuiper G G, Lemmen J G, Carlsson B, et al. Interaction of estrogenic chemicals and phytoestrogens with estrogen receptor β[J]. Endocrinology, 1998, 139(10): 4252-4263.
  • 2Setchell K. Phytoestrogens: The biochemistry, physiology, and implications for human health of soy isoflavones[J]. Am J Clin Nutr, 1998, 68(6): 1333S-1346S.
  • 3Wiseman H. Phytoestrogens[J]. Phytonutrients, 2012, 203-253.
  • 4Liu Z H, Kanjo Y, Mizutani S. A review of phytoestrogens: Their occurrence and fate in the environment[J]. Water Res, 2010, 44(2): 567-577.
  • 5Shi L M, Fang H, Tong W D, et al. QSAR models using a large diverse set of estrogens[J]. J Chem Inf Comput Sci, 2001, 41(1): 186-195.
  • 6Yu S J, Keenan S M, Tong W D, et al. Influence of the structural diversity of data sets on the statistical quality of three-dimensional quantitative structure-activity relationship (3D-QSAR) models: Predicting the estrogenic activity of xenoestrogens[J]. Chem Res Toxicol, 2002, 15(10): 1229-1234.
  • 7Waller C L. A comparative QSAR study using CoMFA, HQSAR, and FRED/SKEYS paradigms for estrogen receptor binding affinities of structurally diverse compounds[J]. J Chem Inf Comput Sci, 2004, 44(2): 758-765.
  • 8Branham W S, Dial S L, Moland C L, et al. Phytoestrogens and mycoestrogens bind to the rat uterine estrogen receptor[J]. J Nutr, 2002, 132(4): 658-664.
  • 9Chiba H, Uehara M, Wu J, et al. Hesperidin, a citrus flavonoid, inhibits bone loss and decreases serum and hepatic lipids in ovariectomized mice[J]. J Nutr, 2003, 133(6): 1892-1897.
  • 10Brzozowski A M, Pike A C, Dauter Z, et al. Molecular basis of agonism and antagonism in the oestrogen receptor[J]. Nature, 1997, 389(6652): 753-758.

引证文献3

二级引证文献5

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部