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DNA混合分析技术的单体型频率估计方法 被引量:5

Estimation of haplotypes based on DNA pooling
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摘要 DNA混合分析技术的广泛使用,能够明显降低研究的工作量和成本,然而仍然有其自身局限,例如损失了大量个体遗传信息、测量误差较大等。为了尽量克服DNA混合分析技术的自身问题,其检测和分析方法在不断发展与完善。在单体型频率估计方面,基于最大期望(expectation-maximization,EM)算法的新方法不断涌现,如HaploPool算法和PoooL算法,其准确性、实用性均增强。 DNA pooling,a fast and economic study strategy,is widely used in areas of scientific research.In spite of various limits,researchers are making their efforts to improve DNA pooling toward a more perfect direction,including allele frequency detection and estimation of haplotypes.In haplotype estimation,more and more analyzing methods originated from the expectation-maximization algorithm have appeared,with improved accuracy and practicality,such as HaploPool algorithm and PoooL algorithm.
出处 《中南大学学报(医学版)》 CAS CSCD 北大核心 2011年第5期457-460,F0003,共5页 Journal of Central South University :Medical Science
基金 国家自然科学基金(30671807 30872173)~~
关键词 DNA混合分析技术 单体型 遗传流行病学 DNA pooling haplotypes genetic epidemiology
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  • 1Arnheim N C.Strange H E.Use of pooled DNA samples to detect linkage disequilibrium of polymorphic restriction fragments and human disease:Studies of HLA class Ⅱ loci[J].Proceedings Nat Acad Sci,1985,82(20):6970-6974.
  • 2Bharti A R,Letendre S L,Patra K P,et al.Malaria diagnosis by a polymerase chain reaction-based assay using a pooling strategy[J].Am J Trop Med Hyg,2009,81(5):754-757.
  • 3Bugeja M J,Booth D,Bennetts B,et al.An investigation of polymorphisms in the 17q11.2-12 CC chemokine gene cluster for association with multiple sclerosis in Australians[J].BMC Med Genet,2006,7:64.
  • 4Matkovich S J,Van Booven D J,Hindes A,et al.Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy,revealing HSPB7 polymorphisms associated with disease[J].J Clin Invest,2010,120(1):280-289.
  • 5Baro J A,Carleos C,Corral N,et al.Power analysis of QTL detection in half-sib families using selective DNA pooling[J].Genet Sel Evol,2001,33(3):231-247.
  • 6Sham P,Bader J S,Craig I,et al.DNA Pooling:a tool for large-scale association studies[J].Nat Rev Genet,2002,3(11):862-871.
  • 7Pearson J V,Huentelman M J,Halperin R F,et al.Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies[J].Am J Hum Genet,2007,80(1):126-139.
  • 8De Bakker P I,Graham R R,Altshuler D,et al.Transferability of tag SNPs to capture common genetic variation in DNA repair genes across multiple populations[J].Pac Symp Biocomput,2006,11:478-486.
  • 9International HapMap Consortium.The International HapMap Project[J].Nature,2003,426(6968):789-796.
  • 10Hoh J,Matsuda F,Peng X,et al.SNP haplotype tagging from DNA pools of two individuals[J].BMC Bioinformatics,2003,4:14.

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