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基于实例的基因分类及确定基因标签模型 被引量:1

Models of gene classification and determining gene tag based on example
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摘要 所建立的模型及所得的结论有利于利用数据库中已有的基因信息快速筛选出潜在的癌症相关基因,模型一和模型二以基因表达水平限值和差异显著性水平为分类要素,将基因分为两类.模型三利用逐步优化思想建立优化模型,确定出六组基因标签.模型四利用小波分析法去噪及相关性检验法,重新确定基因标签,包含8种特征基因,对癌症样本的检测率降低了,说明数据中的噪声能对确定基因标签产生有利的影响. The models and conclusions in this paper which facilitate the usage of the existing gene infomation in the database to screen out the potential tumor-related genes rapidly are studied. The limit value of gene expression and the level of significance of difference are considered as the classification factors in modelⅠ and model Ⅱ, and genes can be divided into two categories. By using zhe stepwise optimizing idea, optimization model and six groups of optimal gene tags are obtained in model Ⅲ. By using the wavelet analysis and correlation test, the gene tags are re-determined in modle Ⅳ, including eight kinds of characteristic genes. By the decrease of the detection rate of cancer samples, that noise in the data produces beneficial effects for determining the gene tags is indicated.
机构地区 西北大学数学系
出处 《纯粹数学与应用数学》 CSCD 2011年第4期515-522,共8页 Pure and Applied Mathematics
基金 西北大学教学改革研究项目(kjg10042)
关键词 最大值最小值原理 t分布检验 相关性分析 0—1矩阵 优化模型 maximum and minimum principle, t-distribution test, correlation analysis, 0-1 matrix, optimization model
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  • 1徐海明,朱军.复杂疾病/性状的基因定位[J].生命科学,2004,16(4):259-260. 被引量:4
  • 2Risch N, Merikangas K. The future of genetic studies of complex human disease[J]. Science, 1996, 273: 1516-1517.
  • 3Risch N, Teng J. The relative power of family-based and case-control designs for linkage-disequilibrium studies of complex human disease-I. DNA pooling[J]. Genome Res, 1998, 8: 1273-1288.
  • 4Tavtigian S V, Simard J, Teng D H. et al. A candidate prostate cancer susceptibility gene at chromosome 17P[J]. Nat Genet, 2001, 27(2): 172-180.
  • 5Drysdale C M, McGraw D W, Stack C B. et al. Complex promoter and coding region beta 2- adrenergic receptor haplotypes alter receptor expression and predict in vivo responsiveness[J]. Proc Natl Acad Sci USA, 2000, 97(19): 10483-10488.
  • 6Fallin D, Cohen A, Essioux L. et al. Gnetic analysis of case-control data using estimated haplo-type frequencies: Application to APOE locus variation and Alzheimer's disease[J]. Genome Res, 2001, 11: 143-151.
  • 7Clayton D G. A generalization of transmission disequilibrium test for uncertain-haplotype transmigsion[J]. Am J Hum Genet, 1999, 65: 1170-1177.
  • 8Zaykin D V, Westfall P H, .Young S S. et al. Testing association of statistically inferred haplotype with discrete and continuous traits in samples of unrelated individuals[J]. Hum Heredity, 2002, 53: 79-91.
  • 9Seltman H, Roeder K, Devlin B. Evolutionary-based association analysis using haplotype data[J]. Genetic Epidemiol, 2003, 25: 48-58.
  • 10Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in diploid population[J]. Mol Biol Evol, 1995, 12: 921-927.

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