应用扩增直接重复序列DNA片段对泰国结核分支杆菌菌株基因差异的研究
The genetic diversity of Mycobacterium tuberculosis strains in Thailand studied by amplification of DNA segments containing direct repetitive sequences
摘要
背景:发展并使用一种用于研究结核分支杆菌基因差异的聚合酶链反应(PCR)设计:结核分支杆菌H_(37)Rv的两个多态性DNA片段被鉴定和测序。然后引物被设计以用于对两个多态性片段同时进行扩增。该方法被用于研究179例临床结核菌分离株,这些菌株以前曾用IS6110的Southern杂交鉴定。结果:两个多态性片段均含有直接重复序列。其中一个片段的直接重复序列位于α-异丙基苹果酸酯合成酶基因的编码序列之间。179个菌株的两个片段经过扩增后,PCR产物的40个型能够被鉴定。该方法能够将38个IS6110单带菌株区分为23个型。属于北京家族的菌株中的大多数具有与H_(37)Rv相同的PCR产物。Nonthaburi组成员的PCR产物彼此间是相似的。结论:这些结果符合北京家族和Nonthaburi组成员起源于两个共同祖先的假说。该PCR方法可能有助于对含IS6110单拷贝的结核菌菌株进行区分。
出处
《国际结核病与肺部疾病杂志》
1998年第1期12-18,共7页
The International Journal of Tuberculosis and Lung Disease
参考文献24
-
1P.Palittapongarnpim,P.Luangsook,S.Tansuphaswadikul,C.Chuchottaworn,R.Prachaktam,B.Sathapatayavongs,丁北川.应用IS 6110探针对泰国结核菌的限定性片段长度多态性研究[J].国际结核病与肺部疾病杂志,1997,0(Z1):106-112. 被引量:1
-
2Small P M,Shafer R W,Hopewell P C,et al.Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in patients with advanced HIV infection. The New England Journal of Medicine . 1993
-
3Daley C L,Small P M,Schecter G F,et al.An outbreak of tuberculosis with accelerated progression among persons infected with the human immunodeficiency virus.An analysis using restriction fragment-length polymorphisms. The New England Journal of Medicine . 1992
-
4Edlin B R,Tokars J I,Grieco M H,et al.An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome. The New England Journal of Medicine . 1992
-
5Small P M,McClenny N B,Singh S P,Schoolnik G K,Tompkins L S,Mickelsen,P A.Molecular strain typing of Mycobacterium tuberculosis to confirm cross-contamination in the mycobacteriology laboratory and modification of procedures to minimize occurrence of false-positive cultures. Journal of Clinical Microbiology . 1993
-
6Shafer R W,Singh S P,Larkin C,Small P M.Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in an immunocompetent patient. Tubercle and Lung Disease . 1995
-
7van Soolingen D.Hermans P W, de Haas P E, Soll D R, van Embden J D.Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an in sertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. Journal of Clinical Microbiology . 1991
-
8Chevrel-Dellagi D.Abderrahman A,Haltiti R,Koubaji H,Gicquel B, Dellagi K.Large-scale DNA fingerprinting of Mycobacterium tuberculosis strains as a tool for epidemiological studies of tuberculosis. Journal of Clinical Microbiology . 1993
-
9Gillespie S H,Kennedy N,Ngowi F I,Fomukong N G,alMaamary S,Dale J W.Restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolated from patients with pulmonary tuberculosis in northern Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene . 1995
-
10Yang Z H. Mtoni I. Chonde M. et al.DNA fingerprinting and phenotyping of Mycobacterium tuberculosis isolates from human immunodeficiency virus(HIV)-seropositive and HIV seronegative patients in Tanzania. Journal of Clinical Microbiology . 1995
二级参考文献26
-
1Small P M,Hopewell F C,Singh S P,et al.The epidemiology of tuberculosis in San Francisco: a population based study using conventional and molecular methods. The New England Journal of Medicine . 1994
-
2Chevrel-Dellagi D,Abderrahman A,Haltiti R,et al.Large scale DNA-fingerprinting of Mycobacterium tuberculosis strains as a tool for epidemiological studies of tuberculosis. Journal of Clinical Microbiology . 1993
-
3Van Embden JDA,Cave MD,Crawford JT,et al.Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. Journal of Clinical Microbiology . 1993
-
4Edlin BR,Tokars JI,Grieco MH,et al.An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome. New England Journal of Medicine, The . 1992
-
5Daley CL,Small PM,Schecter GF,et al.An outbreak of tuberculosis with accelerated progression among persons infected with the human immunodeficiency virus. An analysis using restriction-fragment-length polymorphisms. New England Journal of Medicine, The . 1992
-
6Small PM,Shafer RW,Hopewell PC,et al.Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in patients with advanced HIV infection. New England Journal of Medicine, The . 1993
-
7van Soolingen D,Hermans PW,de Haas PE,et al.Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. Journal of Clinical Microbiology . 1991
-
8Hermans P W,Messadi F,Guebrexabher H,et al.Analysis of the population structure of Mycobacterium tuberculosis in Ethiopia, Tunisia, and the Netherlands: usefulness of DNA typing for global tuberculosis epidemiology. The Journal of Infectious Diseases . 1995
-
9Del Portillo P,Murillo L A,Patarroyo M E.Amplification of a species-specific DNA fragment of Mycobacterium tuberculosis and its possible use in diagnosis. Journal of Clinical Microbiology . 1991
-
10Liebana E,Aranaz A,Francis B,et al.Assessment of genetic markers for species differentiation within the Mycobacterium tuberculosis complex. Journal of Clinical Microbiology . 1996
共引文献4
-
1A.R.Moss,D.Alland,E.Telzak,D.HewlettJr,V.Sharp,P.Chiliade,V.LaBombardi,D.Kabus,B.Hanna,L.Palumbo,K.Brudney,A.Weltman,K.Stoeckle,K.Chirgwin,M.Simberkoff,S.Moghazeh,W.Eisner,M.Lutfey,B.Kreiswirth,丁北川.一株多种耐药结核菌在纽约全市的暴发流行[J].国际结核病与肺部疾病杂志,1997,0(2):46-52. 被引量:1
-
2A.Kiers,A.P.Drost,D.vanSoolingen,J.Veen,丁北川.荷兰一次结核病大暴发期间DNA指纹在发现国际传染源病例中的使用[J].国际结核病与肺部疾病杂志,1997,0(2):69-74.
-
3P.Palittapongarnpim,P.Luangsook,S.Tansuphaswadikul,C.Chuchottaworn,R.Prachaktam,B.Sathapatayavongs,丁北川.应用IS 6110探针对泰国结核菌的限定性片段长度多态性研究[J].国际结核病与肺部疾病杂志,1997,0(Z1):106-112. 被引量:1
-
4D.L.Cohn,R.J.O’Brien,丁北川.限定性片段长度多态性分析用于发展中国家结核病流行病学研究[J].国际结核病与肺部疾病杂志,1998(2):63-73. 被引量:2
-
1祝亚猛,虞有智,王晓枫,张春波.RapidCal.Immuno脱钙剂在石蜡组织制片中的应用[J].诊断病理学杂志,2009,16(1):65-65.
-
2王以光,李戎锋.牲畜链霉菌异青霉素N合成酶基因的克隆与序列分析[J].微生物学报,1996,36(2):87-92. 被引量:5
-
3郭大玮,郭大璘,郎海丽,徐晓莉.太原地区短串联重复序列vWF的多态性DNA片段及其临床应用[J].中华临床医学杂志,2004,5(3):10-11.
-
4刘毅,徐维家,李妍.利用抗生素对大肠埃希菌和铜绿假单胞菌的影响进行菌株区分[J].中国微生态学杂志,2009,21(4):332-333. 被引量:1
-
5曾宪芳,David Rollinson,Tina K Walker,易新元.DNA杂交鉴定血吸虫种株的研究[J].中国寄生虫学与寄生虫病杂志,1993,11(1):1-5. 被引量:6
-
6免疫遗传学[J].国外科技资料目录(医药卫生),2000(7):26-27.
-
7祝梅香,邹星,沈洁,王嫣,徐凤,郭金微,张晶,李亦平.转人组织蛋白酶K基因小鼠的Southern杂交鉴定[J].中国比较医学杂志,2005,15(1):40-42. 被引量:3
-
8史金阳,金红,高红,刘兰青,吕绳敏,陈淑荣.巨细胞病毒即刻早期基因mRNA检测方法的建立[J].中华检验医学杂志,1998,22(3):13-15. 被引量:8
-
9袁建刚,屠郑,徐菁,刘宇梁,刘尔翔,强伯勤.疟原虫抗原B表位NKND在鼠伤寒沙门氏菌鞭毛蛋白中的表达[J].生物化学杂志,1997,13(3):254-258.
-
10符芳,廖灿,潘敏,易翠兴,刘晗,袁思敏,胡顺妍,钟惠珠,李东至.应用微阵列比较基因组杂交技术精确诊断不平衡染色体畸变[J].中华医学遗传学杂志,2010,27(1):47-51. 被引量:6