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How Many Methanol Molecules Can Solvate a Glycine: a PBE1PBE Approach

How Many Methanol Molecules Can Solvate a Glycine: a PBE1PBE Approach
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摘要 Microsolvation of glycine in methanol clusters is explored by the use of DFT calculation method. The lowest energy conformations within 16.72 kJ·mol^-1 of the glycine clustering with one to six methanol molecules, which are obtained at the B3LYP/6-31+G(d) level of theory, are reoptimized at PBE1PBE/6-311+G(d,p). The calculated results agree with our previous results with B3LYP (Chin. J. Chem. Phys. 22 (2009) 577) that the clusters of two forms (Z- and N-form) tend to be isoenergetic when the number of the solvate molecules reaches six. Furthermore, this result is in good agreement with the experiment of the tryptophan-methanol clusters, implying that the present treatments are reasonable and reliable. The results also indicate that nine methanol molecules are not enough to fully solvate a glycine molecule, and a tentative estimation is obtained that ten methanol molecules may fully solvate a glycine molecule, which consists with the experiment results. Microsolvation of glycine in methanol clusters is explored by the use of DFT calculation method. The lowest energy conformations within 16.72 kJ·mol^-1 of the glycine clustering with one to six methanol molecules, which are obtained at the B3LYP/6-31+G(d) level of theory, are reoptimized at PBE1PBE/6-311+G(d,p). The calculated results agree with our previous results with B3LYP (Chin. J. Chem. Phys. 22 (2009) 577) that the clusters of two forms (Z- and N-form) tend to be isoenergetic when the number of the solvate molecules reaches six. Furthermore, this result is in good agreement with the experiment of the tryptophan-methanol clusters, implying that the present treatments are reasonable and reliable. The results also indicate that nine methanol molecules are not enough to fully solvate a glycine molecule, and a tentative estimation is obtained that ten methanol molecules may fully solvate a glycine molecule, which consists with the experiment results.
出处 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2011年第11期1656-1671,共16页 结构化学(英文)
基金 supported by NNSFC (No. 20973067 and 11079020) Guangdong-NSF grants (No. 7005823) the scientific research foundation for the returned overseas Chinese scholars, State Education Ministry the foundation for introduction of talents by the universities in Guangdong Province
关键词 DFT MICROSOLVATION gibbs free energy amino acid GLYCINE DFT, microsolvation, gibbs free energy, amino acid, glycine
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