期刊文献+

Identification and initial characterization of the 3' end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera 被引量:1

Identification and initial characterization of the 3' end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera
原文传递
导出
摘要 Semiochemicals, including pheromones and kairomones, used in pest man- agement programs reduce the need for chemical insecticides, and understanding their interactions with their membrane receptors may help make them more effective in the field. Identification of odorant receptors in the Lepidoptera has mainly been achieved us- ing bioinformatics to search DNA sequences generated by genome or expressed sequence tag (EST) sequencing projects. This study reports a rapid method to identify members of the pheromone receptor subfamily in Lepidoptera. Degenerate oligonucleotide primers were designed against a conserved amino acid sequence in the carboxyl terminus of known lepidopteran pheromone receptors, and the primers were used in a 3' rapid amplifica- tion of complementary DNA (cDNA) ends procedure. Polymerase chain reaction products generated from seven different lepidopteran species were TA cloned and sequenced. The cDNA sequences of 25 transcripts were determined to encode potential members of the pheromone receptor subfamily. These cDNAs ranged from 238 to 642 bp and encoded 49-54 amino acids of the carboxyl terminus. Analysis of the 3' untranslated region reveals that most of the transcripts contain multiple polyadenylation signal sequences, and in the case ofManduca sexta, an alternate polyadenylation signal appears to be used in transcript processing. The 3' untranslated region was also useful in determining unique receptors en- coded by transcripts having highly similar nucleotide and amino acid sequences. Overall, this technique provides a complementary method of pheromone receptor identification in EST sequencing projects, or can be used as a stand-alone method in conjunction with 5' rapid amplification of cDNA ends procedures. Semiochemicals, including pheromones and kairomones, used in pest man- agement programs reduce the need for chemical insecticides, and understanding their interactions with their membrane receptors may help make them more effective in the field. Identification of odorant receptors in the Lepidoptera has mainly been achieved us- ing bioinformatics to search DNA sequences generated by genome or expressed sequence tag (EST) sequencing projects. This study reports a rapid method to identify members of the pheromone receptor subfamily in Lepidoptera. Degenerate oligonucleotide primers were designed against a conserved amino acid sequence in the carboxyl terminus of known lepidopteran pheromone receptors, and the primers were used in a 3' rapid amplifica- tion of complementary DNA (cDNA) ends procedure. Polymerase chain reaction products generated from seven different lepidopteran species were TA cloned and sequenced. The cDNA sequences of 25 transcripts were determined to encode potential members of the pheromone receptor subfamily. These cDNAs ranged from 238 to 642 bp and encoded 49-54 amino acids of the carboxyl terminus. Analysis of the 3' untranslated region reveals that most of the transcripts contain multiple polyadenylation signal sequences, and in the case ofManduca sexta, an alternate polyadenylation signal appears to be used in transcript processing. The 3' untranslated region was also useful in determining unique receptors en- coded by transcripts having highly similar nucleotide and amino acid sequences. Overall, this technique provides a complementary method of pheromone receptor identification in EST sequencing projects, or can be used as a stand-alone method in conjunction with 5' rapid amplification of cDNA ends procedures.
出处 《Insect Science》 SCIE CAS CSCD 2012年第1期64-74,共11页 昆虫科学(英文版)
关键词 degenerate primer PCR odorant receptor pheromone receptor polyadeny- lation signals 3' untranslated region degenerate primer PCR, odorant receptor, pheromone receptor, polyadeny- lation signals, 3' untranslated region
  • 相关文献

参考文献38

  • 1Altschul, S.E, Gish, W., Miller, W, Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology, 215,403-410.
  • 2Beaudoing, E., Freier, S., Wyatt, J.R., Claverie, J-M. and Gautheret, D. (2000) Patterns of variant polyadenylation signal usage in human genes. Genome Research, 10, 1001-1010.
  • 3Buck, L. and Axel, R. (1991) A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell, 65, 175-187.
  • 4Decker, C.J. and Parker, R. (1995) Diversity of cytoplasmic functions for the 3' untranslated region of eukaryotic transcripts. Current Opinion in Cell Biology, 7, 386-392.
  • 5E1-Sayed, A.M., Suckling, D.M., Wearing, C.H. and Byers, J.A. (2006) Potential of mass trapping for long-term pest manage-ment and eradication ofinvasive species. Journal of Economic Entomology, 99, 1550-1564.
  • 6E1-Sayed, A.M. (2008) The Pherobase: Database of Insect Pheromones and Semiochemicals. (http://www.pherobase. com).
  • 7Gao, Q. and Chess, A. (1999) Identification of candidate Drosophila olfactory receptors from genomic DNA. Genomics, 60, 31-39.
  • 8GroBe-Wilde, E., Gohl, T., Bouche, E., Breer, H. and Krieger, J. (2007) Candidate pheromone receptors provide the basis for the response of distinct antennal neurons to pheromonal compounds. European Journal of Neuroscience, 25, 2364- 2373.
  • 9GroBe-Wilde, E., Stieber, R., Forstner, M., Krieger, J., Wicher, D. and Hansson, B.S. (2010) Sex-specific odorant receptors of the tobacco hornworm Manduca sexta. Frontiers in Cellular Neurosciscience, 4, 2. doi: 10.3389/fncel.2010.00022.
  • 10Hall-Pogar, T., Zhang, H., Tian, B. and Lutz, C.S. (2005) Alternative polyadenylation of cyclooxygenase-2. Nucleic Acids Research, 33, 2565-2579.

同被引文献5

引证文献1

二级引证文献1

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部