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DNA序列的甲基化特征提取软件 被引量：2

Sofware for extracting the features of DNA methylation
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摘要 提取(量化)特征是DNA甲基化状态预测中的一个关键步骤,然而不同的方法所使用的特征并不相同,特征量化的具体过程计算繁琐。本文集成文献中的重要特征,设计并实现了DNA序列的特征提取软件工具。该软件封装了特征的计算过程,可以方便地批量计算目标序列的相关特征,为后续的数据分析和挖掘提供便利。 Extracting the feature is one important step for predicting the methylation status of DNA sequence.However,every proposed method was just devised on some features and the calculation process of quantitative feature is complicated.In this paper,we collected the features used in published papers,then designed and implemented the software of extracting these features for DNA sequence.This software can easily process a batch of target sequences and facilitate the subsequent data analysis and mining.
作者 戴胜冬 杨昆 顾靓 王路路
机构地区 杭州电子科技大学计算机学院
出处 《生物信息学》 2012年第1期5-7,共3页 Chinese Journal of Bioinformatics
基金 国家自然科学基金(No.60903086)
关键词 DNA甲基化 特征提取 CPG岛 BLAT 软件 DNA methylation feature extraction CpG island BLAT Software
分类号 Q518.2 [生物学—生物化学]
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参考文献9

  • 1凡时财,张学工.DNA甲基化的生物信息学研究进展[J].生物化学与生物物理进展,2009,36(2):143-150. 被引量：35
  • 2凡时财,邹见效,徐红兵,张学工.人类基因组CpG岛甲基化概况的预测[J].科学通报,2010,55(14):1329-1334. 被引量：6
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二级参考文献37

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共引文献35

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二级引证文献5

生物信息学
2012年 第1期

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