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MicroRNAs研究方法与技术

The methods and technology of microRNAs research
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摘要 MicroRNAs简称miRNAs(微小RNAs),是真核生物、原核生物以及病毒中由非编码蛋白基因转录的初级microRNAs加工成的调控因子。在转录后水平和蛋白质翻译水平,microRNAs通过降解或翻译抑制甚至激活来调控靶mRNA。实验和计算机方法已应用于microRNAs和靶基因的鉴定。大规模测序技术使得microRNAs在不同物种的多样性分析得以实现。着重介绍microRNAs、靶基因及其功能研究的实验技术和计算机方法,以及基于microR-NAs的保守性,借助模式生物中已知的microRNAs,研究其在其他生物中的功能和作用。 MieroRNAs(miRNAs) are small regulatory factors, noncoding RNA molecules transcribed as primary microRNAs (pri-microRNAs) from eukaryotic genomes, prokaryotic genomes and virus. The target mRNAs could be inhibited or activated by degradation or translation during post-transcriptional and translational control of gene expression. Both experimental and computational approaches were used to identify microRNAs and their target genes. Deep sequencing methods recently allowed the analysis of small RNA diversity in different species. This review focused on experimental and computational methods and techniques used in researching microRNAs and target genes, and the functional study of microRNAs was mentioned. In addition, based on the conservatism of microRNAs, studied the function and the role of a new microRNA which was unknown in other organisms while was known in a model organism.
作者 丁伟超 王莹
出处 《生物学杂志》 CAS CSCD 2012年第3期66-70,共5页 Journal of Biology
基金 广东省公共实验室基金项目(2009002)
关键词 MICRORNAS 鉴定 靶基因 功能鉴定 技术 microRNAs identification target genes function detection technology
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参考文献31

  • 1Jurak I, Kramer M F, Mellor J C, et al. Numerous conserved and di- vergent microRNAs expressed by herpes simplex viruses 1 and 2 [ J ]. J Virol, 2010, 84(9): 4659-4672.
  • 2Grishok A, Pasquinelli A E, Conte D, et al. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing[ J ]. Cell, 2001, 106(1) : 23 -34.
  • 3Roberts A P E, Lewis A P, Jopling C L. miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components[J]. Nucleic Acids Res, 2011, 39(17): 7716-7729.
  • 4Jangra R K, Yi M, Lemon S M. Regulation of hepatitis C virus transla- tion and infectious virus production by the MicroRNA miR-122 [ J ]. J Virol, 2010, 84(13): 6615-6625.
  • 5Rhoades M W, Reinhart B J, Lira L P, et al. Prediction of plant mi- croRNA targets[J]. Cell, 2002, 110(4) : 513 -520.
  • 6Achard P, Herr A, Banlcombe D C, et al. Modulation of floral devel- opment by a gibberellin-regulated microRNA [J]. Development, 2004, 131(14) : 3357 -3365.
  • 7Bartcl D P. MicroRNAs : genomics, biogenesis, mechanism, and func- tion[J]. Cell, 2004, 116(2) : 281 -297.
  • 8Vogelstein B, Cummins J M, He Y P, et al. The colorectal microR- NAome[J]. P Natl Acad Sci USA, 2006, 103 (10) : 3687 - 3692.
  • 9Calin G A, Dumitru C D, Shimizu M, et al. Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia [ J ]. Proc Natl Acad Sci U S A, 2002, 99(24) : 15524 - 15529.
  • 10Martinez J, Obernosterer G, Leuschner P J F, et al. Post-transcrip- tional regulation of microRNA expression [ J ]. Rna, 2006, 12 (7) : 1161 - 1167.

二级参考文献21

  • 1LAGOS-QUINTANA M,RAUHUT R,LENDECKEL W,et al.Identification of novel genes coding for small expressed RNAs[J].Science,2001,294(5543):853-858.
  • 2LAU N C,LIML P,WEINSTEIN E G,et al.An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans[J].Science,2001,294:858-862.
  • 3LEE R C,AMBROS V.An extensive class of small RNAs in Caenorhabditis elegans[J].Science,2001,294:862-864.
  • 4REINHART B J,WEINSTEIN E G,RHOADES MW,et al.MicroRNAs in plants[J].Genes Dev,2002,16(13):1616-1626.
  • 5LLAVE C,KASSCHAU K D,RECTOR M A,et al.Endogenous and silencing-associated small RNAs in plants[J].Plant Cell,2002,14(7):1605-1619.
  • 6PARK W,LI J J,SONG R T,et al.A Dicer homolog,and HEN1,a novel protein,act in microRNA metabolism in Arabidopsis thaliana[J].Curr Biol,2002,12(17):1484-1495.
  • 7PALATNIK J F,ALLEN E,WU X L,at al.Control of leaf morphogenesis by microRNA[J].Nature,2003,425(6955):257-263.
  • 8WANG J F,ZHOU H,CHEN YQ,et al.Identification of 20 microRNAs from Oryza sativa[J].Nucleic Acids Res,2004,32(5):1688-1695.
  • 9WANG X J,REYES J L,CHUA N H,et al.Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets[J].Genome Biol,2004,5(9),839-848.
  • 10SUNKAR R,ZHU J K.Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis[J].Plant Cell,2004,16(8):2001-2019.

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