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人类肠道病毒74、80和87型山东地方株的鉴定及基因特征分析 被引量:3

Identification and Molecular Characterization of Human Enteroviruses Type 74,80,and 87 Isolated in Shandong Province,China
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摘要 随着基于VP1序列分析的分子定型方法的推广应用,许多新型人类肠道病毒(Human enterovirus,HEV)陆续被发现。本研究通过对1989~2010年山东省急性弛缓性麻痹(Acute flaccid paralysis,AFP)监测系统分离到的非脊髓灰质炎肠道病毒进行VP1完整编码区的序列扩增及分子定型,共发现1株EV74,3株EV80和1株EV87。同源性分析显示EV74、EV80和EV87山东分离株与原型株的核苷酸同源性分别为81.4%,76.4%~81.7%以及80.3%。系统发生学分析显示山东地方株与国内外其他分离株的亲缘关系均较远。这是在中国大陆地区首次发现EV74和EV87,其中EV87山东分离株为全球第2个鉴定出的分离株。这3种新型HEV在AFP监测系统中的分离率较低,提示尚未在我国导致大规模流行。 An increasing number of new types of human enteroviruses(HEV) have been identified with the application of molecular typing method based on VP1 sequence analysis.In this study,the non-polio enteroviruses(NPEV) isolated from acute flaccid paralysis(AFP) cases in Shandong Province,China were typed via molecular typing method,and 1 EV74,3 EV80 and 1 EV87 strains were identified.Homologous comparison revealed EV74,EV80 and EV87 Shandong strains had 81.4%,76.4%-81.7%,and 80.3% VP1 identities with prototype strains.Phylogenetic analysis suggested a remote genetic distance with other strains.This is the first report of EV74 and EV87 in China's Mainland,and the low isolation rate in AFP surveillance suggested these three serotypes has not been the predominant viruses in China.
出处 《病毒学报》 CAS CSCD 北大核心 2012年第6期658-662,共5页 Chinese Journal of Virology
基金 山东省医药卫生科技发展计划项目课题(2011QZ013)
关键词 新型肠道病毒 急性弛缓性麻痹 分子进化 基因特征 New human enterovirus Acute flaccid paralysis Molecular evolution Genetic characterization
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参考文献15

  • 1Knowles N J,Hovi T,HyypiT,et al.Picornaviridae.In:King A M Q,Adams M J,Carstens E B,et al(ed.),Virus taxonomy:classification and nomenclature of viruses:Ninth Report of the International committee on taxonomy of viruses[M].San Diego:Elsevier,2011,pp855-880.
  • 2Oberste M S,Maher K,Kilptrick D R,et al.Molecular evolution of the human enteroviruses:correlation of se-rotype with VP1sequence and application to picornavir-us classification[J].J Virol,1999,73(3):1941-1948.
  • 3陶泽新,李岩,王海岩,宋立志,刘桂芳,刘尧,林小娟,冯蕾,杨赫,樊庆莹,徐爱强.肠道病毒A组山东地方株的基因型分布[J].病毒学报,2009,25(6):410-414. 被引量:18
  • 4王海岩,刘昆,陶泽新,李岩,刘桂芳,刘尧,冯蕾,樊庆莹,杨赫,宋立志,徐爱强.肠道病毒B组山东地方株的基因型分布[J].病毒学报,2010,26(5):357-362. 被引量:26
  • 5陶泽新,王海岩,徐爱强,宋立志,李岩,刘桂芳,刘尧,樊庆莹.人类肠道病毒B组73、75和97型山东地方株的鉴定及其基因特征分析[J].病毒学报,2010,26(1):16-19. 被引量:3
  • 6Tao Z,Cui N,Xu A,et al.Genomic characterization of an enterovirus97strain isolated in Shandong,China[J].Virus Genes,2010,41(2):158-164.
  • 7Xu A,Tao Z,Lin X,et al.The complete genome sequence of an enterovirus76isolate in China reveals a recombination event[J].Arch Virol,2011,156(9):1685-1689.
  • 8Xu A,Tao Z,Wang H,et al.The complete genomeanalysis of two enterovirus96strains isolated in China in 2005and2009[J].Virus Genes,2011,42(3):323-330.
  • 9Oberste M S,Maher K,Flemister M R,et al.Com-parison of classic and molecular approaches for the identification of untypeable enteroviruses[J].J Clin Microbiol,2000,38(3):1170-1174.
  • 10Kroneman A,Vennema H,Deforche K,et al.An automated genotyping tool for enteroviruses and noro-viruses[J].J Clin Virol,2011,51(2):121-125.

二级参考文献43

  • 1王海岩,徐爱强,朱贞,李岩,纪峰,张勇,张丽,许文波.无菌性脑膜炎暴发中Echo30病毒的基因特征及分子进化分析[J].中华流行病学杂志,2006,27(9):793-797. 被引量:19
  • 2田炳均吴燕张东华何丽芳丁峥嵘陆林.新型肠道病毒EV75的分子生物学鉴定[J].中华流行病学杂志,2007,28(7):725-726. 被引量:9
  • 3Oberste MS, Maher K, Kilpatrick DR, et al. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol, 1999,37(5) : 1288-1293.
  • 4Oberste MS, Maher K, Nix WA, et al. Molecular identification of 13 new enterovirus types, EV79-88, EV97, and EV100-101 members of the species Human Enterovirus B. Virus Res, 2007 128: 34-42.
  • 5Oberste MS, Schnurr D, Maher K, et al. Molecular identification of new picomaviruses and characterization of a proposed enterovirus 73 serotype. J Gen Virol, 2001,82: 409-416.
  • 6Norder H, Bjerregaard L, Magnius L, et al. Sequencing of ‘untypable' enteroviruses reveals two new types, EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. J Gen Virol, 2003, 84 : 827-836.
  • 7Oberste MS, Michele SM, Maher K, et al. Molecular identification and characterization of two proposed new enterovirus serotypes, EV74 and EV75. J Gen Virol, 2004, 85 (11 ) : 3205-3212.
  • 8Oberste MS, Maher K, Michele SM, et al. Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A. J Gen Virol, 2005, 86:445-451.
  • 9Oberste M S, Maher K, Kilptrick D R, et al. Molecular evolution of the human enteroviruses : correlation of serotype with VP1 sequence and application to picornavirus classification[J]. J Virol, 1999, 73(3): 1941-1948.
  • 10Oberste M S, Maher K, Nix W A, et al. Molecular identfication of 13 new enterovirus types, EV79-88, EV97, and EV100-101, members of the species Human Enterovirus B[J]. Virus Res, 2007, 128(1-2): 34-42.

共引文献50

同被引文献18

  • 1Oberste M S, Michele S M, Maher K,et al. Molecularidentification and characterization of two proposed newenterovirus serotypes, EV74 and EV75[J]. J Gen Vir-ol, 2004, 85(11): 3205-3212.
  • 2Wang J, Zhang Y,Hong M, et al. Isolation and charac-terization of a Chinese strain of human enterovirus 74from a healthy child in the Tibet Autonomous Region ofChina[J]. Arch Virol, 2012, 157(8): 1593-1598.
  • 3Oberste M S,Maher K,Kilpatrick D R,et al. Molecularevolution of the human enteroviruses: correlation of se-rotype with VP1 sequence and application to picornavir-us classification[J].J Virol, 1999 , 73(3) : 1941-1948.
  • 4Hall T A. BioEdit: a user-friendly biological sequence a-lignment editor and analysis program for Windows 95/98/NT[J]. Nucl Acids Symp Ser,1999, 41: 95-98.
  • 5Tamura K? Dudley J? Nei M, et al. MEGA4 : MolecularEvolutionary Genetics Analysis (MEGA) software ver-sion 4. 0[J]. Mol Biol Evol, 2007, 24(8): 1596-1599.
  • 6Lole K S,Bollinger R C, Paranjape R S, et al. Full-length human immunodeficiency virus type 1 genomesfrom subtype C-infected seroconverters in India? withevidence of intersubtype recombination [J] . J Virol,1999, 73(1): 152-160.
  • 7Oberste M S,Maher K,Kilptrick D R,et al.Molecular evolution of the human enteroviruses:correlation of serotype with VP1sequence and application to picornavirus classification[J].J Virol,1999,73(3):1941-1948.
  • 8Cramblett H G,Haynes R E,Azimi P H,et al.Nosocomial infection with echovirus type 11in handicapped and premature infants[J].Pediatrics,1973,51(4):603-607.
  • 9Yang J,Cui N,Wang H,et al.Evaluating the prevalence and molecular epidemiology of echovirus 11isolated from sewage in Shandong Province,China in 2010[J].Virus Genes,2012,44:388-394.
  • 10Iwai M,Yoshida H,Matsuura K,et al.Molecular epidemiology of echoviruses 11and 13,based on an environmental surveillance conducted in Toyama Prefecture,2002-2003[J].Appl Environ Microbiol,2006,72:6381-6387.

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