期刊文献+

Establishment of TaqMan Real-time Quantitative PCR Assay for Foreign Gene Copy Numbers in Transgenic Soybean 被引量:2

Establishment of TaqMan Real-time Quantitative PCR Assay for Foreign Gene Copy Numbers in Transgenic Soybean
下载PDF
导出
摘要 TaqMan quantitative PCR technique was used to detect the copies of exogenous CaMV35S flanks sequence in transgenic soybean. With soybean lectin as the endogenous reference gene, and gene complex DNA in non-GMO soybeans as the endogenous reference standard, the gradient dilution method was used to separately calculate Ct value of endogenous reference gene and plasmid DNA and correlation standard curve equation of logarithm of copies, and then to calculate the copies of samples through substituting thus-obtained Ct into the standard curve equation. The standard curve equation of endogenous reference gene was y =–3.422x+35.201, R2=0.998; the standard curve equation of exogenous gene was y =–3.495x+35.303, R2=0.999. The sample copies was got by putting Ct value into the standard curve equation, and it was the ratio of exogenous gene and reference gene. We found that CaMV35S gene in transgenic soy was single copy. TaqMan quantitative PCR technique was used to detect the copies of exogenous CaMV35S flanks sequence in transgenic soybean. With soybean lectin as the endogenous reference gene, and gene complex DNA in non-GMO soybeans as the endogenous reference standard, the gradient dilution method was used to separately calculate Ct value of endogenous reference gene and plasmid DNA and correlation standard curve equation of logarithm of copies, and then to calculate the copies of samples through substituting thus-obtained Ct into the standard curve equation. The standard curve equation of endogenous reference gene was y =–3.422x+35.201, R2=0.998; the standard curve equation of exogenous gene was y =–3.495x+35.303, R2=0.999. The sample copies was got by putting Ct value into the standard curve equation, and it was the ratio of exogenous gene and reference gene. We found that CaMV35S gene in transgenic soy was single copy.
出处 《Journal of Northeast Agricultural University(English Edition)》 CAS 2012年第4期48-52,共5页 东北农业大学学报(英文版)
基金 Supported by the Program of Technology Bureau of Harbin (2010RFQXN101) the Subproject of Transgenic Significant Specific Project (20112X08004-002-002-004)
关键词 real-time PCR transgenic soybean COPY LECTIN CaMV35S flanking sequence real-time PCR transgenic soybean copy lectin CaMV35S flanking sequence
  • 相关文献

参考文献2

二级参考文献23

  • 1James C. Global status of commercialized transgenic crops[Z].ISAAA Briefs, 2003, No.30.
  • 2Larramendy M L, EI-Rifai W, Kokkola A, et al.Comparative genomic hybridization reveals differences in DNA copy number changes between sporadic gastric carcinomas and gastric carcinomas from patients with hereditary nonpolyposis colorectal cancer [J]. Cancer Genet Cytogene, 1998, 106(1): 62-65.
  • 3Kallioniemi A, Visakorpi T, Karhu R, et al. Gene copy number analysis by fluorescence in situ hybridization and comparative genomic hybridization[J] . Methods, 1996, 9(1):113-121.
  • 4Armour JA, Sismani C, Patsalis PC, et al. Measurement of locus copy number by hybridization with amplifiable probe.Nucleic Acids Res,2000, 28 (2): 605-609.
  • 5Lucito R, West J, Reiner A , et al. Detecting gene copy number fluctuation in tumor cells by microarray analysis of genomic representations [J]. Genome Res , 2000, 10(11):1726-1736.
  • 6Callaway AS, Abranches R, Scroggs J , et al. Highthroughput transgene copy number estimation by competitive PCR[J]. Plant Molecular Biology Reporter,2002, 20: 265-277.
  • 7Mason G, Provero P, Vaira AM, et al. Estimating the number of integrations in transformed plants by quantitative real-time PCR[J]. BMC Biotechnol, 2002,2 (1): 20.
  • 8Song P, Cai CQ, Skokut M, et al. Quantitative real-time PCR as a screening tool for estimating transgene copy number in WHISKERS(tm)-defived transgenic maize[J]. Plant Cell Rep, 2002,20:948-954.
  • 9Ding J, Jia J, Yang L, et al. Validation of a rice-specific Gene, Sucrose-Phosphate Synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes[J]. J Agric Food Chem, 2004, 52(11):3372-3377.
  • 10Sambrook J, Russell DW. Molecular Cloning: A laboratory manual; cold spring harbor laboratory press: cold spring harbor, NY[Z]. 2001, 3.

共引文献49

同被引文献28

引证文献2

二级引证文献2

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部