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Methods for extraction of microorganism DNA from glacier surface snow

Methods for extraction of microorganism DNA from glacier surface snow
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摘要 In order to thoroughly investigate the diversity of glacier microorganisms, four DNA extraction methods with differem lysis pat- terns were tested and two screened methods (the Bosshard-Bano method and the Zhou method) were optimized for the most ef- fective form of the filter membrane (cut vs. uncut), the DNA extraction method, and the precipitation method. The two optimized methods were then compared with the commercial Mo-Bio DNA extraction kit, and the results showed that the kit was generally suitable for extraction of microorganism DNA fi'om glacier surface snow. Procedurally, it was found that a modified Boss- hard-Bano method (i.e., cutting the filter membrane into pieces, using a specific lysis pattern [lysozyme (5 mg/mL)-protease K ( 1 mg/mL)-CTAB ( 1%)-SDS ( 1%)], performing the extraction only once by chloroform-isoamyl alcohol (24: 1), and conducting DNA precipitation by pure ethanol) was also an effective and less expensive method for extraction of microorganism DNA from glacier surface snow. In order to thoroughly investigate the diversity of glacier microorganisms, four DNA extraction methods with differem lysis pat- terns were tested and two screened methods (the Bosshard-Bano method and the Zhou method) were optimized for the most ef- fective form of the filter membrane (cut vs. uncut), the DNA extraction method, and the precipitation method. The two optimized methods were then compared with the commercial Mo-Bio DNA extraction kit, and the results showed that the kit was generally suitable for extraction of microorganism DNA fi'om glacier surface snow. Procedurally, it was found that a modified Boss- hard-Bano method (i.e., cutting the filter membrane into pieces, using a specific lysis pattern [lysozyme (5 mg/mL)-protease K ( 1 mg/mL)-CTAB ( 1%)-SDS ( 1%)], performing the extraction only once by chloroform-isoamyl alcohol (24: 1), and conducting DNA precipitation by pure ethanol) was also an effective and less expensive method for extraction of microorganism DNA from glacier surface snow.
出处 《Research in Cold and Arid Regions》 2012年第6期484-489,共6页 寒旱区科学(英文版)
基金 supported by the National Natural Science Foundation of China (Nos. 40825017, 40576001 and 31100369)
关键词 glacier surface snow extraction of microorganism DNA optimizing method glacier surface snow extraction of microorganism DNA optimizing method
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