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玉米LIM结构域蛋白基因家族分析 被引量：7

Genome-wide Analysis of LIM Domain-containing Protein Gene Family in Maize
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摘要 采用生物信息学的方法,在玉米全基因组水平鉴定并分析玉米LIM蛋白基因,鉴定出11个ZmLIM基因,分别分布于玉米的8条染色体上。结构域分析表明,多数LIM蛋白包括2个典型的LIM结构域。系统发育分析表明,LIM家族可以分为3个亚家族。假定调控元件分析发现,所有LIM基因启动子都具有大量花粉特异表达元件,相对来说其他组织器官特异表达,激素和逆境调控元件数量很少。EST基因表达数据分析表明,该家族成员具有明显的时空表达特性。 By bioinformatic analysis, maize LIM genes were isolated and analyzed in those functions in whole-genome scale. A total of 11 maize LIM genes（ZmLIM1 to ZmLIMll） were identified. ZmLIM genes were dis- tributed in all the maize chromosomes except chromosome 7 and 8. Alignment and motif analysis results revealed ma- jor maize LIM proteins share two typical conserved domains. Phylogenetic analysis indicated LIM family could be di- vided into three subfamilies. Putative cis-acting regulatory elements involved in specific tissue or organ, phytohor- mones and stress, the tissue-specific expression elements, especial pollen-specific element, were observed in the promoters of all ZmLIM genes; other elements distribution presented fragmentarily. Expression data of ESTs suggested maize LIM genes had temporal and spatial expression pattern.
作者 张海燕 李佐同 赵长江 杨克军 王玉凤 胡雪微 赵莹
机构地区 黑龙江八一农垦大学农学院
出处 《玉米科学》 CAS CSCD 北大核心 2013年第3期40-47,共8页 Journal of Maize Sciences
基金 “十二五”农村领域国家科技计划项目子课题(2011BAD16B1103) 大庆市科技计划项目(scyh-2011-73) 黑龙江省寒地作物种质改良与栽培重点实验室开放课题项目(CGIC201208) 黑龙江省垦区科研项目(NK12A-03-15) 黑龙江八一农垦大学引进人才科研启动计划课题
关键词 玉米 LIM结构域 LIM基因家族 生物信息学 Maize LIM domain LIM gene family Bioinformatic analysis
分类号 S513.035.3 [农业科学—作物学]
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参考文献27

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共引文献22

同被引文献101

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二级引证文献20

玉米科学
2013年 第3期

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