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基于PEM的基因组结构变异检测方法

Methods for detecting genome structural variation based on PEM
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摘要 结构变异普遍存在于人类基因组中,与人类的健康和疾病息息相关,目前基因组结构变异检测方法层出不穷,其中基于双末端映射的检测方法发展尤为迅速.本文将这类主流的检测方法加以分类并进行了详细论述与分析,对更精准的基因组结构变异检测技术的研发具有指导意义.将多种检测方法有机结合共同应用于结构变异的检测,是结构变异检测技术一个未来发展趋势. Genome structural variation is ubiquitous among individuals and closely related to human health and disease. In recent years, a substantial number of methods for discovering structural varia- tion have sprung up, among which techniques based on paired-end mapping have developed especially rapidly. These state-of-the-art methods are classified into several categories and the detailed analysis and discussion are carried on, which have great significance for the research of structural variation de- tection technology. It should be a future trend to develop an approach that is organic combination of multi-class methods to structural variation detection process.
出处 《北京交通大学学报》 CAS CSCD 北大核心 2013年第6期8-12,共5页 JOURNAL OF BEIJING JIAOTONG UNIVERSITY
基金 国家自然科学基金资助项目(51275030)
关键词 基因组结构变异(SV) 基因组测序 双末端映射(PEM) genome structural variation (SV) genome sequencing paired-end mapping (PEM)
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  • 1Eichler E E,Nickerson D A,Altshuler D,et al.Completing the map of human genetic variation[J].Nature,2007,447(7141):161-165.
  • 2Aitman T J,Dong R,Vyse T J,etal.Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans[J].Nature,2006,439(7078):851-855.
  • 3Sharp A J,Hansen S,Selzer R R,et al.Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome[J].Nature genetics,2006,38(9):1038-1042.
  • 4Sebat J,Lakshmi B,Malhotra D,et al.Strong association of de novo copy number mutations with autism[J].Science,2007,316(5823):445-449.
  • 5Wheeler D A,Srinivasan M,Egholm M,et al.The complete genome of an individual by massively parallel DNA sequencing[J].Nature,2008,452(7189):872-876.
  • 6Drmanac R,Sparks A B,Callow M J,et al.Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays[J].Science,2010,327(5961):78-81.
  • 7Medvedev P,Stanciu M,Brudno M.Computational methods for discovering structural variation with next-generation sequencing[J].Nature Methods,2009,6:S13-S20.
  • 8Mills R E,Walter K,Stewart C,et al.Mapping copy number variation by population-scale genome sequencing[J].Nature,2011,470(7332):59-65.
  • 9Alkan C,Coe B P,Eichler E E.Genome structural variation discovery and genotyping[J].Nature Reviews Genetics,2011,12(5):363-376.
  • 10Volik S,Zhao S,Chin K,et al.End-sequence profiling:sequence-based analysis of aberrant genomes[J].Proceedings of the National Academy of Sciences,2003,100(13):7696-7701.

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