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基于IPA^@生物信息平台筛选维吾尔族宫颈癌前病变患者血浆预警蛋白 被引量:3

Screening the potential early-warning plasma biomarkers specific to cervical precancerous lesion in Uyghur women based on IPA^@ bioinformatics analysis
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摘要 目的依托IPA@在线生物信息学平台探讨维吾尔族患者宫颈癌前病变的发生与癌变机理,寻找血浆预警蛋白。方法运用IPA@在线生物信息学软件,针对前期研究中通过蛋白质组学方法筛选出的在维吾尔族妇女癌前病变宫颈内上皮瘤样病变CINⅡ和Ⅲ级患者血浆中31个差异蛋白进行生物学功能注释、调控网络分析、典型通路分析和生物标志物筛查分析。结果 IPA@分析发现CINⅡ/Ⅲ患者血浆中的差异蛋白的生物功能主要集中在炎症反应、细胞与细胞之间信号与作用和细胞生长与增殖,涉及的通路主要是急性期反应通路、JAK/Stat通路和IL-4通路,并且筛选出2种生物标志性蛋白,它们是代谢相关蛋白(ApoAⅠ)、信号传导相关蛋白(mTOR)。结论 ApoAⅠ和mTOR可作为宫颈癌及癌前病变的候选血浆预警蛋白。 Objective To screen the early-warning plasma biomarkers of cervical intraepithelial neoplasiaⅡ/Ⅲ stage(CINⅡ/Ⅲ)in Uygur women by Ingenuity Pathway Analysis(IPA),and to explain the pathogenesis of cervical canc-er. Methods 31 plasma differentially expressed proteins which were analyzed and identified by proteomic techniques were performed by functional annotation,networks analysis,biofuction analysis,canonical pathways analysis and IPA-biomarker filter analysis using IPA^@online bioinformatics software. Results As the result of IPA^@analysis, when classified according to function,inflammatory response,cell to cell signaling and interaction,cellular growth and proliferation were most frequently identified in CINⅡ/Ⅲ. Acute phase response signaling,JAK / Stat signaling and IL-4 signaling were identified as the canonical pathways that are overrepresented in CINⅡ/Ⅲ. Two plasma proteins(ApoAⅠand mTOR)as candidate biomarker were screened. Conclusions The proteins ApoAⅠand mTOR are poten-tially candidate plasma markers of cervical cancer and cervical precancerous lesion.
出处 《基础医学与临床》 CSCD 北大核心 2014年第1期6-10,共5页 Basic and Clinical Medicine
基金 国家自然科学基金(81060171)
关键词 维吾尔族妇女 宫颈内上皮瘤样病变 IPA@生物信息学分析 血浆生物标志物 Uyghur women cervical intraepithelial neoplasia IPA^@bioinformatics analysis plasma biomarkers
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  • 1Eckardt K, Taube A, Eckel J. Obesity-associated insulin resistance in skeletal muscle: role of lipid accumulation and physical inactivity [ J ]. Rev Endoc Metab Disord, 2011, 12: 163-172.
  • 2Huang da W, Sherman BT, Stephens R, et al. DAVID gene ID conversion tool [ J ]. Bioinformation, 2008, 2:428-430.
  • 3Huang da W, Sherman BT, Lempieki RA. Systematic and integrative analysis of large gene lists using DAVID bioin- formaties resources [J]. Nat Protoc, 2009, 4: 44-57.
  • 4Salwinski L, Miller CS, Smith A J, et al. The database of interacting proteins: 2004 update [ J]. Nucleic Acids Res, 2004, 32: 449-451.
  • 5Mishra GR, Suresh M, Kumaran K, et al. Human protein reference database-2006 update [J]. Nucleic Acids Res, 2006, 34: 411-414.
  • 6V Procaeeio, D Depetris, P Soularue, et al. eDNA se- quence and chromosomal localization of the NDUFS8 human gene coding for the 23 kDa subunit of the mitochondrial complex I [J]. Biochim Biophys Acta, 1997, 1351: 37- 41.
  • 7Walker JE. The NADH : ubiquinone oxidoreductase ( com- plex I ) of respiratory chains [J]. Biophys Acta, 1992, 25 : 253-324.
  • 8Weidner U, Geier S, Ptoek A, et al. The gene locus of the proton-transloeating NADH: ubiquinone oxidoreductase in escherichia coli: organization of the 14 genes and rela- tionship between the derived proteins and subunits of mito-ehondrial complex I [J]. J blol Biol, 1993, 233: 109-122.
  • 9Duarte M, Videira A. Respiratory chain complex I is es- sential for sexual development in Neurospora and binding of iron sulfur clusters are required for enzyme assembly [J]. Genetics, 2000, 156: 607-615.
  • 10Loeffen J, Smeitink J, Triepels R, et al. The first nucle- ar-encoded complex I mMutation in a patient with leigh syndrome [J]. Am J Hum Genet, 1998, 63: 1598-1608.

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