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后全基因组病例对照研究时代的功能研究策略 被引量:1

Research strategy of the case-control post-genome-wide association study
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摘要 自首次报道了有关人类年龄相关性黄斑变性的全基因组关联研究(GWAS)以来,人们通过GWAS方法发现并鉴定了大量与人类复杂性疾病关联的遗传变异。但是,对这些遗传变异位点的生物学功能尚不十分清楚。本文重点介绍了在后GWAS时代,对疾病易感基因位点进行精细定位的方法和功能学研究进展。在后GWAS时代,遗传机制研究可以帮助临床深入地理解疾病的发病机制。 Since the first paper reported the finding of genetic variation contributing to human age-related macular de-generation by genome-wide association study(GWAS) in 2005, large number of human complex diseases associated geneticvariants have been identified through GWAS method. However, the biological function of these genetic variants is not veryclear. The present paper reviewed the methods of fine-mapping and the progress of the functional studies for these suscepti-bility variants. In the post GWAS Era, the study of genetic mechanisms can help us to understand the disease pathogenesis.
出处 《天津医药》 CAS 2015年第7期810-813,共4页 Tianjin Medical Journal
基金 国家自然科学基金资助项目(81470153)
关键词 基因组 病例对照研究 多态性 单核苷酸 全基因组关联研究 精细定位 功能研究 易感基因 综述 genome case-control studies polymorphism single nucleotide genome-wide association study fine mapping functional study susceptibility gene review
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  • 1Visscher PM, Brown MA, McCarthy MI, et al. Five years of GWAS discovery[J]. Am J Hum Genet, 2012, 90(1): 7-24. doi: lO.lO16/j. ajhg.2011.11.029.
  • 2Welter D, MacArthur J, Morales J, et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations[J]. Nucleic Acids Res, 2014, 42(Database issue): D1001-10061 doi: 10.1093/nar/gkt1229.
  • 3Cao CC, Sun X. Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare hap- lotype carriers by overlapping pool sequencing[J]. Bioinformatics, 2015,31(4):515-522.doi: 10.1093/bioinformatics/btu670.
  • 4Reich DE, Cargill M, Bolk S, et al. Linkage disequilibrium in the human genome[J]. Nature, 2001, 411(6834): 199-204.
  • 5Kemppainen P, Knight CG, Sarma DK, et al. Linkage disequilibri-um network analysis (LDna) gives a global view of chromosomal in- versions, local adaptation and geographic structure[J]. Mol Ecol Re- sour, 2015. doi: 10.1111/1755-0998.12369.[Epubahead of print].
  • 6International HapMap C, Ahshuler DM, Gibbs RA, et al. Integrat- ing common and rare genetic variation in diverse human populations [J]. Nature, 2010, 467(7311): 52-58. doi: lO.1038/nature09298.
  • 7Sharma M, Kruger R, Gasser T. From genome-wide association studies to next-generation sequencing: lessons from the past and planning for the future[J]. JAMA Neurol, 2014, 71(1): 5-6. doi: 10.1001/j amaneurol.2013.3682.
  • 8Romanel A, Lago S, Prandi D, et al. ASEQ: fast allele-specific studies from next-generation sequencing data[J]. BMC Med Genomics, 2015, 8:84. doi: 10.1186/s 12920-015-0084-2.
  • 9Study Group of Millennium Genome Project for Cancer, Sakamoto H, Yoshimura K, et al. Genetic variation in PSCA is associated with susceptibility to diffuse-type gastric cancer [J]. Nat Genet, 2008, 40 (6): 730-740. doi: 10.1038/ng. 152.
  • 10Saeki N, Saito A, Choi IJ, et al. A functional single nucleotide poly- morphism in mucin 1, at chromosome lq22, determines susceptibili- ty to diffuse-type gastric cancer[J]. Gastroenterology, 2011, 140(3): 892-902. doi: 10.1053/j.gastro.2010.10.058.

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