期刊文献+

Catch-bond behavior of DNA condensate under tension 被引量:1

Catch-bond behavior of DNA condensate under tension
下载PDF
导出
摘要 Toroid formation is an important mechanism underlying DNA condensation, which has been investigated extensively by single-molecule experiments in vitro. Here, the de-condensation dynamics of DNA condensates were studied using magnetic tweezers combined with Brownian dynamics simulations. The experimental results revealed a surprising nonmonotonic dependence of the unfolding rate on the force applied under strong adhesion conditions, resembling the catchbond behavior reported in the field of ligand-receptor interactions. Simulation results showed that the different unfolding pathways of DNA condensate under large forces derive from the force-dependent deformation of the DNA toroid, which explains the catch-bond behavior of DNA condensate in the magnetic tweezers experiments. These results challenge the universality of the regular toroidal DNA unwrapping mechanism and provide the most complete description to date of multivalent cation-dependent DNA unwrapping under tension. Toroid formation is an important mechanism underlying DNA condensation, which has been investigated extensively by single-molecule experiments in vitro. Here, the de-condensation dynamics of DNA condensates were studied using magnetic tweezers combined with Brownian dynamics simulations. The experimental results revealed a surprising nonmonotonic dependence of the unfolding rate on the force applied under strong adhesion conditions, resembling the catchbond behavior reported in the field of ligand-receptor interactions. Simulation results showed that the different unfolding pathways of DNA condensate under large forces derive from the force-dependent deformation of the DNA toroid, which explains the catch-bond behavior of DNA condensate in the magnetic tweezers experiments. These results challenge the universality of the regular toroidal DNA unwrapping mechanism and provide the most complete description to date of multivalent cation-dependent DNA unwrapping under tension.
出处 《Chinese Physics B》 SCIE EI CAS CSCD 2015年第12期105-108,共4页 中国物理B(英文版)
基金 Project supported by the National Natural Science Foundation of China(Grant Nos.11104341 11474346 11274374 and 61275192) the National Key Basic Research Program of China(Grant No.2013CB837200) the Mechanobiology Institute at National University of Singapore
关键词 DNA toroid magnetic tweezers catch bond DNA toroid,magnetic tweezers,catch bond
  • 相关文献

参考文献22

  • 1Luger K, Mader A W, Richmond R K, Sargent D F and Richmond T J 1997 Nature 389 251.
  • 2Ishihama A 2012 Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 88 485.
  • 3Lim C J, Lee S Y, Teramoto J, Ishihama A and Yan J 2013 Nucleic Acids Res. 41 746.
  • 4Wilson M E and Miller L K 1986 Virology 151 315.
  • 5Liu Y, Wu J, Chen H, Hew C L and Yan J 2010 Virology 408 197.
  • 6Besteman K, Hage S, Dekker N H and Lemay S G 2007 Phys. Rev. Lett. 98 058103.
  • 7Parsegian V A, Rand R P and Ran D C 2000 Proc. Natl. Acad. Sci. USA 97 3987.
  • 8Hud N V and Vilfan I D 2005 Annu. Rev. Biophys. Biomol. Struct. 34 295.
  • 9Keyser U F, van Dorp S and Lemay S G 2010 Chem. Soc. Rev. 39 939.
  • 10Yoshikawa Y, Yoshikawa K and Kanbe T 1999 Langmuir 15 4085.

同被引文献4

引证文献1

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部