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DNA Methylation Affects Gene Alternative Splicing in Plants： An Example from Rice 被引量：3

DNA Methylation Affects Gene Alternative Splicing in Plants： An Example from Rice
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摘要 Dear Editor,Alternative splicing （AS） of pre-mRNA is an evolutionarily conserved mechanism to increase transcriptomic and proteomic complexity, and hence phenotypic diversity, via the production of multiple mRNA isoforms from a single gene （Reddy et al., 2013）. AS is regulated by various cis-acting regulatory elements and RNA-binding proteins （Reddy et al., 2013）. Dear Editor,Alternative splicing （AS） of pre-mRNA is an evolutionarily conserved mechanism to increase transcriptomic and proteomic complexity, and hence phenotypic diversity, via the production of multiple mRNA isoforms from a single gene （Reddy et al., 2013）. AS is regulated by various cis-acting regulatory elements and RNA-binding proteins （Reddy et al., 2013）.
作者 Wang, Xutong Hu, Lanjuan Wang, Xiaofei Li, Ning Xu, Chunming Gong, Lei Liu, Bao
机构地区 NE Normal Univ
出处 《Molecular Plant》 SCIE CAS CSCD 2016年第2期305-307,共3页 分子植物（英文版）
分类号 Q78 [生物学—分子生物学] Q943.2 [生物学—植物学]
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参考文献11

  • 1Gelfman, S., Cohen, N., Yearim, A., and Ast, G. (2013). DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure. Genome Res. 23:789-799.
  • 2Hu, L., Li, N., Xu, C., Zhong, S., Lin, X., Yang, J., Zhou, T., Yuliang, A., Wu, Y., and Chen, Y.-R. (2014). Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality. Proc. Natl. Acad. Sci. USA 111:10642-10647..
  • 3Jones, P.A. (2012). Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 13:484-492.
  • 4Li, W., Lin, W.D., Ray, P., Lan, P., and Schmidt, W. (2013). Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots. Plant Physiol. 162 (3):1750-1763.
  • 5Li-Byarlay, H., Li, Y., Stroud, H., Feng, S., Newman, T.C., Kaneda, M., Hou, K.K., Worley, K.C., Elsik, C.G., and Wickline, S.A. (2013) RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proc. Natl. Acad. Sci. USA 110:12750-12755.
  • 6Luco, R.F., AIIo, M., Schor, I.E., Kornblihtt, A.R., and Misteli, T. (2011). Epigenetics in alternative pre-mRNA splicing. Cell 144:16-26.
  • 7Maor, G.L., Yearim, A., and Ast, G. (2015). The alternative role of DNA methylation in splicing regulation. Trends Genet. 31:274-280.
  • 8Reddy, A.S., Marquez, Y., Kalyna, M., and Barta, A. (2013). Complexity of the alternative splicing landscape in plants. Plant Cell 25:3657-3683.
  • 9Regulski, M., Lu, Z., Kendall, J., Donoghue, M.T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., and McCombie, W.R. (2013). The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res. 23:1651-1662.
  • 10Yearim, A., Gelfman, S., Shayevitch, R., Melcer, S., Glaich, O., Mallm, J.-P., Nissim-Rafinia, M., Cohen, A.-H.S., Rippe, K., and Meshorer, E. (2015). HP1 is involved in regulating the global impact of DNA methylation on alternative splicing. Cell Rep. 10:1122-1134.

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Molecular Plant
2016年 第2期

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