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应用SNP标记高效鉴定黄瓜杂交种纯度 被引量:7

Highly Efficient Identification of Seed Purity of Cucumber Hybrid by SNP Marker
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摘要 以71个市售黄瓜品种为材料,应用高分辨率熔解曲线技术筛选可用于黄瓜纯度检验和品种鉴定的SNP位点,并通过焦磷酸测序验证,得到14个SNP位点,这些位点在71个市售黄瓜品种中的多态信息量为0.079~0.528。为确保结果的准确性,利用该鉴定方法检测黄瓜杂交种F1的94粒种子,结果显示,Chr0108等6个SNP位点检测的种子纯度均为100%,且鉴定结果与SSR标记检测方法相符。表明,对供试样品同时进行这6个SNP位点的检测分析,能够更加可靠、准确、高效地鉴定其纯度,并可用于DUS测试分析,为今后葫芦科作物的品种审定和新品种保护等工作奠定基础。 To test the purity of hybrid of cucumber(Cucumis sativus L.),14 SNP site was screened by high resolution melting(HRM)and pyrosequencing technology from 71 commercial cucumber cultivars,of which polymorphism information(PIC)were 0.079-0.528.To verify the accuracy of the results in purity test,94F1 hybrid seeds were screened and identified using 6SNP markers.The result showed that the seed purity was 100%,which was consistent with the results identified by SSR method overall,6SNP markers for identification of purity in testing samples can be more reliable,accurate,and efficient method,and can be used in DUS testing,which laid the foundation of cucurbit crops variety examination and protection of new varieties for the future.
出处 《西北农业学报》 CAS CSCD 北大核心 2016年第4期595-604,共10页 Acta Agriculturae Boreali-occidentalis Sinica
基金 "十二五"国家863现代农业技术领域项目(2012AA100101) 上海市科委重点科技攻关项目(12391901500)~~
关键词 黄瓜 种子纯度 SNP标记 高分辨率熔解曲线 焦磷酸测序 Cucumber Seed purity Single nucleotide polymorphism(SNP) High resolution melting(HRM) Pyrosequencing technology
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参考文献10

  • 1JUNG J,PARK S W,LIU W Y,et al. Discovery of single nueleotide polymorphism in Capsicum and SNP markers for cultivar identificationl-J3. Euphytica, 2010,175 (1) : 91-107.
  • 2宋伟,王凤格,田红丽,易红梅,王璐,赵久然.利用核心SNP位点鉴别玉米自交系的研究[J].玉米科学,2013,21(4):28-32. 被引量:28
  • 3WIM D,CRISTINA E,CRISTINA R,et al. A set of EST- SNPs for map saturation and cultivar identification in melon [J]. BMC Plant Biology, 2009,9 90.
  • 4兰青阔,张桂华,王永,赵新,朱珠,崔兴华,郭永泽,程奕.基于SNP标记的黄瓜杂交种纯度鉴定方法[J].中国蔬菜,2012(03X):58-63. 被引量:27
  • 5李欧静,张桂华,兰青阔,王永,赵新,朱珠,陈锐,郭永泽.基于SNP标记的种子纯度高效检测分析模型的建立[J].湖南农业科学,2012(10):9-11. 被引量:8
  • 6GARVIN M R,SAITOH K,GHARRETT A J. Application of single nucleotide polymorphisms to non-model species: a technical review[J]. Molecular Ecology Resources, 2010,10 (6) :915-934.
  • 7LI F,NIU B, HUANG Y,et al. Application of high-resolu- tion DNA melting for genotyping in lepidopteran non-model species:Ostrinia furnacalis (Crambidae) [J]. PLoS One, 2012,7(1) :29664.
  • 8WANG SH,ZHANG L L MEYER E,et al. Construction o{ a high-resolution genetic linkage map and comparative ge- home analysis for the reef-building coral Acropora millepo- rarJ]. Genome Biology ,2009,10(11) : 126.
  • 9PATI N, SCHOWINSKY V, KOKANOVIC O, et al. A comparison between SNa Pshot, pyrosequencing, and biplex invader SNP genotyping methods: accuracy, cost, and throughput F J 1. Journal Biochemical Biophysiological Methods, 2004,60(1) : 1-12.
  • 10Yi-Dan Li,Zhi-Zhan Chu,Xiang-Guo Liu,Hai-Chun Jing,Yao-Guang Liu,Dong-Yun Hao.A Cost-effective High-resolution Melting Approach using the EvaGreen Dye for DNA Polymorphism Detection and Genotyping in Plants[J].Journal of Integrative Plant Biology,2010,52(12):1036-1042. 被引量:19

二级参考文献53

  • 1Yong Yong SHI,Lin HE.SHEsis,a powerful software platform for analyses of linkage disequilibrium,haplotype construction,and genetic association at polymorphism loci[J].Cell Research,2005,15(2):97-98. 被引量:381
  • 2李丽,郑晓鹰,柳李旺.用SRAP标记分析黄瓜品种遗传多样性及鉴定品种[J].分子植物育种,2006,4(5):702-708. 被引量:52
  • 3Greene EA,Codomo CA,Taylor NE,Henikoff JG,Till BJ,Reynolds SH,Enns LC,Burtner C,Johnson JE,Odden AR,Comai L,Henikoff S (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.Genetics 164,731-740.
  • 4Herrmann MG,Durtschi JD,Bromley LK,Wittwer CT,Voelkerding KV (2006) Amplicon DNA melting analysis for mutation scanning and genotyping:cross-platform comparison of instruments and dyes.Clin.Chem.52,494-503.
  • 5Hofinger BJ,Jing HC,Hammond-Kosack KE,Kanyuka K (2009)High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley.Theor.Appl.Genet.119,851-865.
  • 6Ihrig J,Lill R,Muhlenhoff U (2006) Application of the DNA-specific dye EvaGreen for the routine quantification of DNA in microplates.Anal.Biochem.359,265-267.
  • 7Martin A,Lee J,Kichey T,Gerentes D,Zivy M,Tatout C,Dubois F,Balliau T,Valot B,Davanture M,Terce-Laforgue T,Quillere I,Coque M,Gallais A,Gonzalez-Moro MB,Bethencourt L,Habash DZ,Lea PJ,Charcosset A,Perez P,Murigneux A,Sakakibara H,Edwards KJ,Hirel B (2006) Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.Plant Cell 18,3252-3274.
  • 8Okagaki RJ,Neuffer MG,Wessler SR (1991) A deletion common to two independently derived waxy mutations of maize.Genetics 128,425-431.
  • 9Sang F,Ren J (2006) Capillary electrophoresis of double-stranded DNA fragments using a new fluorescence intercalating dye EvaGreen.J.Sep.Sci.29,1275-1280.
  • 10Sun H,Wang HT,Kwon WS,In JG,Lee BS,Yang DC (2010)Development of molecular markers for the determination of the new cultivar Chunpoong' in Panax ginseng C.A.MEYER associated with a major latex-like protein gene.Biol.Pharm.Bull.33,183-187.

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