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Transcriptome response of wheat Norin 10 to long-term elevated CO_2 under high yield field condition

Transcriptome response of wheat Norin 10 to long-term elevated CO_2 under high yield field condition
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摘要 The increasing atmospheric carbon dioxide concentration, caused by fossil fuel combustion and deforestation, plays an important role in plant growth and development. Wheat, as a major staple crop, adapts to climate change by tuning its inherent molecular mechanism, which is not well understood. The present study employed the RNA-Seq method to generate transcriptome profiles of the wheat Norin 10 in response to elevated CO_2 in comparison with ambient CO_2. The 10 895 787 high-quality clean reads of Norin 10 were assembled de novo using Trinity(without a reference genome) resulting in a total of 18 206 candidate transcripts with significant BLAST matches. GO enrichment analysis of Norin 10 at different CO_2 concentrations showed that some functional genes related to plastids, precursor metabolites, and energy, thylakoid and photosynthesis were apparently enriched at elevated CO_2(550 μmol mol^–1) in contrast to that at ambient CO_2(400 μmol mol^–1); these findings were further confirmed by RT-PCR analysis. The findings demonstrated the specific effects of elevated CO_2 during long-term period in free air CO_2 enrichment(FACE) on transcriptome response of the high yielding wheat variety, Norin 10, which has a large spike. The increasing atmospheric carbon dioxide concentration, caused by fossil fuel combustion and deforestation, plays an important role in plant growth and development. Wheat, as a major staple crop, adapts to climate change by tuning its inherent molecular mechanism, which is not well understood. The present study employed the RNA-Seq method to generate transcriptome profiles of the wheat Norin 10 in response to elevated CO_2 in comparison with ambient CO_2. The 10 895 787 high-quality clean reads of Norin 10 were assembled de novo using Trinity(without a reference genome) resulting in a total of 18 206 candidate transcripts with significant BLAST matches. GO enrichment analysis of Norin 10 at different CO_2 concentrations showed that some functional genes related to plastids, precursor metabolites, and energy, thylakoid and photosynthesis were apparently enriched at elevated CO_2(550 μmol mol^–1) in contrast to that at ambient CO_2(400 μmol mol^–1); these findings were further confirmed by RT-PCR analysis. The findings demonstrated the specific effects of elevated CO_2 during long-term period in free air CO_2 enrichment(FACE) on transcriptome response of the high yielding wheat variety, Norin 10, which has a large spike.
出处 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2016年第9期2142-2152,共11页 农业科学学报(英文版)
基金 financial supports from the National Basic Research Program of China(973 Program,2012CB955904) the Agricultural Science and Technology Innovation Program(ASTIP)of Chinese Academy of Agricultural Sciences
关键词 Norin 10 transcriptome response wheat long term elevated carbon dioxide GO enrichment Norin 10 transcriptome response wheat long term elevated carbon dioxide GO enrichment
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  • 1Ainsworth E A, Rogers A, Vodkin L O, Walter A, Schurr U. 2006.The effects of elevated C02 concentration on soybean geneexpression. An analysis of growing and mature leaves. PlantPhysiology, 142, 135-147.
  • 2Anders S, Huber W. 2010. Differential expression analysis forsequence count data. Genome Biology, 11, R106.
  • 3Ashburner M, Ball C A, Blake J A, Botstein D, Butler H, CherryJ M, Davis A P, Dolinski K, Dwight S S, Eppig J T, HarrisM A, Hill D P, Issel-Tarver L, Kasarskis A, Lewis S, MateseJ C, Richardson J E, Ringwald M, Rubin G M, Sherlock G.2000. Gene ontology: Tool for the unification of biology.The gene ontology consortium. Nature Genetics, 25,25-29.
  • 4Barah P, Naresh D, Jayavelu N D, Mundy J, Bones AM. 2013.Genome scale transcriptional response diversity amongten ecotypes of Arabidopsis thaliana during heat stress.Frontiers in Plant Science, 4, 532.
  • 5Besford R T, Ludwig L J, Withers A C. 1990. The green houseeffect: acclimation of tomato plants growing in high C02:Photosynthesis and ribulose-1,5-bisphosphate carboxylaseprotein. Journal of Experimental Botany, 41, 925-931.
  • 6Borojevic K. 2005. The transfer and history of “reduced heightgenes” (Rht) in wheat from Japan to Europe. Journal ofHeredity, 96, 455-459.
  • 7Brautigam K, Dietzel L, Kleine T, Stroher E, Wormuth D, DietzK J. 2009. Dynamic plastid redox signals integrate geneexpression and metabolism to induce distinct metabolicstates in photosynthetic acclimation in Arabidopsis. ThePlant Cell, 21, 2715-2732.
  • 8Brenchley R, Spannagl M, Pfeifer M, Barker G, D'Amore R, AllenA, Mckenzie N, Kramer M, Kerhornou A, Bolser D, Kay S,Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo M C, SehgalS, Gill B, Kianian S, etal. 2012. Analysis of the bread wheatgenome using whole-genome shotgun sequencing. Nature,491, 705-710.
  • 9Conesa A, Gotz S. 2008. Blast2GO: A comprehensive suite forfunctional analysis in plant genomics. International Journalof Plant Genomics, 2008, 619832.
  • 10Conesa A, Gotz S, Garcia-Gomez J M, Terol J, Talon M,Robles M. 2005. Blast2GO: A universal tool for annotation,visualization and analysis in functional genomics research.Bioinformatics, 21, 3674-3676.

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