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Single-nucleotide polymorphisms,mapping and association analysis of 1-FFT-A1 gene in wheat 被引量:2

Single-nucleotide polymorphisms,mapping and association analysis of 1-FFT-A1 gene in wheat
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摘要 Fructans are major nonstructural carbohydrates in wheat (Triticum aestivum L.). Fructan 1-fructosyltransferase (1-FFT) is the key enzyme in fructan biosynthesis. In the present study, 96 sequence variants were detected in the 1-FFT-A 1 gene among 26 wheat accessions including UR208, and 15 of them result in amino acid substitutions, forming four haplotypes. Two markers M39 and M2164 were developed based on the InDe121-39 and SNP-2164 polymorphisms to distinguish the three haplotypes in the 1-FFT-AI. 1-FFT-A1 was located on chromosome 4A using marker M2164 and was flanked by markers Xcwm27 and 6-SFT-A 1. By association analysis using a natural wheat population consisted of 154 accessions, the results showed that the two markers were significantly associated with water-soluble carbohydrate (WSC) content in the lower internode stem and total stem at the early and middle grain filling stages, 1 000-grain weight (TGW) at different grain filling stages and peduncle length (PLE). Comparison of the effects of three haplotypes on agronomic traits indicated that TGW, PLE and total number of spikelets per spike (TNSS)were significantly influenced by haplotypes. Haplll showed a significant positive effect on TGW, PLE and TNSS. Fructans are major nonstructural carbohydrates in wheat (Triticum aestivum L.). Fructan 1-fructosyltransferase (1-FFT) is the key enzyme in fructan biosynthesis. In the present study, 96 sequence variants were detected in the 1-FFT-A 1 gene among 26 wheat accessions including UR208, and 15 of them result in amino acid substitutions, forming four haplotypes. Two markers M39 and M2164 were developed based on the InDe121-39 and SNP-2164 polymorphisms to distinguish the three haplotypes in the 1-FFT-AI. 1-FFT-A1 was located on chromosome 4A using marker M2164 and was flanked by markers Xcwm27 and 6-SFT-A 1. By association analysis using a natural wheat population consisted of 154 accessions, the results showed that the two markers were significantly associated with water-soluble carbohydrate (WSC) content in the lower internode stem and total stem at the early and middle grain filling stages, 1 000-grain weight (TGW) at different grain filling stages and peduncle length (PLE). Comparison of the effects of three haplotypes on agronomic traits indicated that TGW, PLE and total number of spikelets per spike (TNSS)were significantly influenced by haplotypes. Haplll showed a significant positive effect on TGW, PLE and TNSS.
出处 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2017年第4期789-799,共11页 农业科学学报(英文版)
基金 supported by the National Natural Science Foundation of China(31461143024) the National Major Project for Developing New Genetically Modified(GM) Crops of China(2016ZX08010005) the Agricultural Science and Technology Innovation Program,China(ASTIP)
关键词 1-FFT-A1 single nucleotide polymorphism association analysis HAPLOTYPE marker development WHEAT 1-FFT-A1, single nucleotide polymorphism, association analysis, haplotype, marker development, wheat
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