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Recent advances in molecular machines based on toehold-mediated strand displacement reaction

Recent advances in molecular machines based on toehold-mediated strand displacement reaction
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摘要 Background: The DNA strand displacement reaction, which uses flexible and programmable DNA molecules as reaction components, is the basis of dynamic DNA nanotechnology, and has been widely used in the design of complex autonomous behaviors. Results: In this review, we first briefly introduce the concept of toehold-mediated strand displacement reaction and its kinetics regulation in pure solution. Thereafter, we review the recent progresses in DNA complex circuit, the assembly of AuNPs driven by DNA molecular machines, and the detection of single nucleotide polymorphism (SNP) using DNA toehold exchange probes in pure solution and in interface state. Lastly, the applications of toehold-mediated strand displacement in the genetic regulation and silencing through combining gene circuit with RNA interference systems are reviewed. Conclusions: The toehold-mediated strand displacement reaction makes DNA an excellent material for the fabrication of molecular machines and complex circuit, and may potentially be used in the disease diagnosis and the regulation of gene silencing in the near future. Background: The DNA strand displacement reaction, which uses flexible and programmable DNA molecules as reaction components, is the basis of dynamic DNA nanotechnology, and has been widely used in the design of complex autonomous behaviors. Results: In this review, we first briefly introduce the concept of toehold-mediated strand displacement reaction and its kinetics regulation in pure solution. Thereafter, we review the recent progresses in DNA complex circuit, the assembly of AuNPs driven by DNA molecular machines, and the detection of single nucleotide polymorphism (SNP) using DNA toehold exchange probes in pure solution and in interface state. Lastly, the applications of toehold-mediated strand displacement in the genetic regulation and silencing through combining gene circuit with RNA interference systems are reviewed. Conclusions: The toehold-mediated strand displacement reaction makes DNA an excellent material for the fabrication of molecular machines and complex circuit, and may potentially be used in the disease diagnosis and the regulation of gene silencing in the near future.
出处 《Frontiers of Electrical and Electronic Engineering in China》 CSCD 2017年第1期25-41,共17页 中国电气与电子工程前沿(英文版)
基金 We would like to thank the National Natural Science Foundation of China (Nos. 91427304, 21434007, 21574122, 51573175, and 21404098), the National Basic Research Program of China (No. 2012CB821500), and the Fundamental Research Funds for the Central Universities (WK3450000002 and WK2060200017) for their financial support.
关键词 toehold-mediated strand displacement DNA molecular machines SNP gene expression regulation toehold-mediated strand displacement DNA molecular machines SNP gene expression regulation
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