期刊文献+

The complete mitochondrial genome of Oreta fuscopurpurea(Lepidoptera: Drepanidae) and its phylogenetic implications

The complete mitochondrial genome of Oreta fuscopurpurea(Lepidoptera: Drepanidae) and its phylogenetic implications
原文传递
导出
摘要 In this study, the first complete mitochondrial genome(mitogenome) of lepidopteran family Drepanidae(superfamily Drepanoidea) was reported with the notes about its phylogenetic implications. The Oreta fuscopurpurea mitogenome is 15,564 bp in length, including 13 protein-coding genes, two ribosomal RNAs(lrRNA and srRNA), 22 transfer RNAs and a non-coding control region(AT-rich region), with a 79.6% A+T content. The gene orientation and arrangement of the mitogenome are the same as other sequenced lepidopterans. All protein-coding genes usually start with the common ATN codon except for COI gene, which used CGA as the initial codon; eight PCGs use a typical stop codon of TAA, whereas the remaining PCGs use incomplete stop codon of T or TA. All tRNAs have the typical clover-leaf structure with the exception of t RNA^(Ser)(AGN). The lrRNA and sr RNA genes are 1,409 bp and 778 bp in size respectively, with the former harboring one(TA)_(13) microsatellite-like repeat and an 17 bp insertion. The 20 intergenic spacers totaling of 184 bp and 8 overlapping sequences totaling of 25 bp are scattered throughout the whole mitogenome. The 526 bp AT-rich region contains some structures characteristic of lepidopterans, such as the motif ATAGA preceded by an 19 bp poly-T stretch, a tRNA-like and a sterm-loop structures. Phylogenetic analysis of the Oreta fuscopurpurea with other 47 insect species covering 20 lepidopteran families were conducted based on the sequence data of the 13 mitogenomic protein coding genes with maximum likelihood(ML) and Bayesian inference(BI) methods, and the results showed distinctly that the superfamily Drepanoidea was sister to the clade of(Bombycoidea, Lasiocampoidea) +(Noctuoidea, Geometroidea). In this study, the first complete mitochondrial genome(mitogenome) of lepidopteran family Drepanidae(superfamily Drepanoidea) was reported with the notes about its phylogenetic implications. The Oreta fuscopurpurea mitogenome is 15,564 bp in length, including 13 protein-coding genes, two ribosomal RNAs(lrRNA and srRNA), 22 transfer RNAs and a non-coding control region(AT-rich region), with a 79.6% A+T content. The gene orientation and arrangement of the mitogenome are the same as other sequenced lepidopterans. All protein-coding genes usually start with the common ATN codon except for COI gene, which used CGA as the initial codon; eight PCGs use a typical stop codon of TAA, whereas the remaining PCGs use incomplete stop codon of T or TA. All tRNAs have the typical clover-leaf structure with the exception of t RNA^(Ser)(AGN). The lrRNA and sr RNA genes are 1,409 bp and 778 bp in size respectively, with the former harboring one(TA)_(13) microsatellite-like repeat and an 17 bp insertion. The 20 intergenic spacers totaling of 184 bp and 8 overlapping sequences totaling of 25 bp are scattered throughout the whole mitogenome. The 526 bp AT-rich region contains some structures characteristic of lepidopterans, such as the motif ATAGA preceded by an 19 bp poly-T stretch, a tRNA-like and a sterm-loop structures. Phylogenetic analysis of the Oreta fuscopurpurea with other 47 insect species covering 20 lepidopteran families were conducted based on the sequence data of the 13 mitogenomic protein coding genes with maximum likelihood(ML) and Bayesian inference(BI) methods, and the results showed distinctly that the superfamily Drepanoidea was sister to the clade of(Bombycoidea, Lasiocampoidea) +(Noctuoidea, Geometroidea).
出处 《Zoological Systematics》 CSCD 2018年第2期139-155,共17页 动物分类学报(英文版)
基金 supported by the Special Funds for Cultivation of Preponderant Disciplines of Anhui Normal University funds from the State Key Laboratory of Palaeobiology and Stratigraphy(Nanjing Institute of Geology and Palaeontology,CAS)(Y626040108)
关键词 Drepanoidea mt DNA tRNA-like sequence phylogenetic analysis Drepanoidea mt DNA tRNA-like sequence phylogenetic analysis
  • 相关文献

参考文献2

二级参考文献52

  • 1HAOJiasheng LIChunxiang SUNXiaoyan YANGQun.Phylogeny and divergence time estimation of cheilostome bryozoans based on mitochodrial 16S rRNA sequences[J].Chinese Science Bulletin,2005,50(12):1205-1211. 被引量:14
  • 2Ailing Li,Qiaoling Zhao,Shunming Tang,Zhifang Zhang,Shenyuan Pan,Guifang Shen.Molecular phylogeny of the domesticated silkworm,Bombyx mori, based on the sequences of mitochondrialcytochrome b genes[J]. Journal of Genetics . 2005 (2)
  • 3Graziano Pesole,Carmela Gissi,Anna De Chirico,Cecilia Saccone.Nucleotide Substitution Rate of Mammalian Mitochondrial Genomes[J]. Journal of Molecular Evolution . 1999 (4)
  • 4Jun Adachi,Masami Hasegawa.Model of amino acid substitution in proteins encoded by mitochondrial DNA[J]. Journal of Molecular Evolution . 1996 (4)
  • 5Hideaki Maekawa,Naoko Takada,Kenichi Mikitani,Teru Ogura,Naoko Miyajima,Haruhiko Fujiwara,Masahiko Kobayashi,Osamu Ninaki.Nucleolus organizers in the wild silkworm Bombyx mandarina and the domesticated silkworm B. mori[J]. Chromosoma . 1988 (4)
  • 6Motoo Kimura.A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences[J]. Journal of Molecular Evolution . 1980 (2)
  • 7E. Kawaguchi.Zytologische Untersuchungen am Seidenspinner und seinen Verwandten[J]. Zeitschrift für Zellforschung und Mikroskopische Anatomie . 1928 (4)
  • 8Wolstenholme D R.Animal mitochondrial DNA: Structure and evo- lution. International Review of Cytology . 1992
  • 9Junqueira A C.The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae). Gene . 2004
  • 10Cha S Y,Yoon H J,Lee E M, et al.The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee,Bombus ignites (Hymenoptera: Apidae). Gene . 2007

共引文献23

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部