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A study of the lipid-mediated dimerization of the RAGE TM+JM domains by molecular dynamic simulations

A study of the lipid-mediated dimerization of the RAGE TM+JM domains by molecular dynamic simulations
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摘要 Receptor for Advanced Glycation End-products(RAGE) binds to a number of ligand families to display important roles in hyperglycemia, senescence, inflammation, neurodegeneration and cancer. It is reported that RAGE regulates the related biological processes via homo-dimerization by the transmembrane(TM) domain, and evidence further shows that the intracellular domain of RAGE has an influence on the dimerization activity of RAGE. In this study, we explored the underlying interaction mechanism of RAGE TM domains by multiscale coarse-grained(CG) dynamic simulations. Two switching packing modes of the TM dimeric conformations were observed. Through a series of site-directed mutations, we further emphasized the key roles of the A342xxxG346xxG349xxxT353xxL356xxxV360motif in the left-handed configuration and the L345xxxG349xxG352xxxL356motif in the right-handed configuration. In addition, we revealed that the juxtamembrane(JM) domain within JM-A375 can determine the RAGE TM dimeric structure. Overall, we provide the molecular insights into the switching dimerization of RAGE TM domains, as well as the regulation from the JM domains mediated by the anionic lipids. Receptor for Advanced Glycation End-products(RAGE) binds to a number of ligand families to display important roles in hyperglycemia, senescence, inflammation, neurodegeneration and cancer. It is reported that RAGE regulates the related biological processes via homo-dimerization by the transmembrane(TM) domain, and evidence further shows that the intracellular domain of RAGE has an influence on the dimerization activity of RAGE. In this study, we explored the underlying interaction mechanism of RAGE TM domains by multiscale coarse-grained(CG) dynamic simulations. Two switching packing modes of the TM dimeric conformations were observed. Through a series of site-directed mutations, we further emphasized the key roles of the A^(342)xxxG^(346)xxG^(349)xxxT^(353)xxL^(356)xxxV^(360) motif in the left-handed configuration and the L^(345)xxxG^(349)xxG^(352)xxxL^(356) motif in the right-handed configuration. In addition, we revealed that the juxtamembrane(JM) domain within JM-A375 can determine the RAGE TM dimeric structure. Overall, we provide the molecular insights into the switching dimerization of RAGE TM domains, as well as the regulation from the JM domains mediated by the anionic lipids.
出处 《Chinese Chemical Letters》 SCIE CAS CSCD 2018年第7期1151-1154,共4页 中国化学快报(英文版)
基金 supported by the National Natural Science Foundation of China (Nos. 21672019, 21372026, 21402006) the Fundamental Research Funds for the Central Universities (No. XK1701) partly supported by CHEMCLOUDCOMPUTING
关键词 RAGE DIMERIZATION TM+JM domains Lipid Regulation Coarse-grained simulations RAGE Dimerization TM+JM domains Lipid Regulation Coarse-grained simulations
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