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Plant phylogenomics based on genome-partitioning strategies:Progress and prospects 被引量:7

Plant phylogenomics based on genome-partitioning strategies:Progress and prospects
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摘要 The rapid expansion of next-generation sequencing (NGS) has generated a powerful array of approaches to address fundamental questions in biology. Several genome-partitioning strategies to sequence selected subsets of the genome have emerged in the fields of phylogenomics and evolutionary genomics. In this review, we summarize the applications, advantages and limitations of four NGS-based genome- partitioning approaches in plant phylogenomics: genome skimming, transcriptome sequencing (RNA- seq), restriction site associated DNA sequencing (RAD-Seq), and targeted capture (Hyb-seq). Of these four genome-partitioning approaches, targeted capture (especially Hyb-seq) shows the greatest promise for plant phy^ogenetics over the next fex~ years. This reviex~ wi~ aid ~esea^chers in their selection of appropriate genome-partitioning approaches to address questions of evolutionary scale, where we anticipate continued development and expansion ofwhole-genome sequencing strategies in the fields of plant phylogenomics and evolutionary biology research. The rapid expansion of next-generation sequencing(NGS) has generated a powerful array of approaches to address fundamental questions in biology. Several genome-partitioning strategies to sequence selected subsets of the genome have emerged in the fields of phylogenomics and evolutionary genomics.In this review, we summarize the applications, advantages and limitations of four NGS-based genomepartitioning approaches in plant phylogenomics: genome skimming, transcriptome sequencing(RNAseq), restriction site associated DNA sequencing(RAD-Seq), and targeted capture(Hyb-seq). Of these four genome-partitioning approaches, targeted capture(especially Hyb-seq) shows the greatest promise for plant phylogenetics over the next few years. This review will aid researchers in their selection of appropriate genome-partitioning approaches to address questions of evolutionary scale, where we anticipate continued development and expansion of whole-genome sequencing strategies in the fields of plant phylogenomics and evolutionary biology research.
出处 《Plant Diversity》 SCIE CAS CSCD 2018年第4期158-164,共7页 植物多样性(英文版)
基金 supported by the Large-scale Scientific Facilities of the Chinese Academy of Sciences (Grant No: 2017-LSFGBOWS-01) the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB31000000) the Program of Science and Technology Talents Training of Yunnan Province (2017HA014)
关键词 Plant phylogenomics Next-generation sequencing Whole-genome sequencing Genome skimming RAD-Seq Targeted capture 基因组 分割方法 植物学 植物系统
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