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异构机群系统中序列比对并行算法进展

Research Progress of Parallel Sequence Alignment Algorithms in Heterogeneous Computing Environments
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摘要 简要介绍生物序列比对问题,生物序列比对分为双序列比对和多序列比对两大类,介绍了双序列比对并行算法和多序列比对并行算法的研究现状,并分析它们的主要设计思想及其性能。最后,对异构机群计算环境下序列比对近似并行算法的研究进行简要讨论。
作者 李显宁 LI Xianning(Department of Computer,Guangxi Technological College of Machinery and Electricity,Nanning,China,530007)
出处 《福建电脑》 2019年第4期67-69,共3页 Journal of Fujian Computer
基金 广西机电职业技术学院异构机群系统上序列比对并行处理研究项目(No.[2008]KY014)资助
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  • 1陈国良.并行算法的可扩放性分析[J].小型微型计算机系统,1995,16(2):10-16. 被引量:12
  • 2Aloysius P,Daniel J,Ward W.Review multiple sequence alignment in phylogenetic analysis[J].Molecular Phylogenetics and Evolution, 2000,16(3) : 317-330.
  • 3Benson D A,Karsch-Mizrachi I,Lipman D J,et al.GenBank[J].Nucleic Acids Research, 2000,28 ( 1 ) : 15 - 18.
  • 4Batista R B,Alves de Melo A C M.Z-align:An exact and parallel strategy for local biological sequence alignment in user-restricted memory space[C]//Proc of 2006 IEEE International Conference on Cluster Computing,25-28 September 2006,Barcelona,Spain,2006: 1-10.
  • 5Boukerche A,Alves de Melo A C M,Ayala-Rincon M,et al.Parallel strategies for the local biological sequence alignment in a cluster of workstations[J].Journal of Parallel and Distributed Computing, 2007,67(2) : 170-185.
  • 6Yap T K,Frieder O,Martino R L.Parallel computation in biological sequence analysis[J].IEEE Trans on Parallel and Distributed Systems, 1998,9: 283-294.
  • 7Yap T K,Frieder O,Martino R L.High performance computational methods for biological sequence analysis [M].Norwell,MA:Kluwer, 1996.
  • 8Rajko S,Aluru S.Space and time optimal parallel sequence alignments[J].IEEE Transactions on Parallel and Distributed Systems, 2004,18(2) : 1070-1081.
  • 9Needleman S B,Wunsch C D.A general method applicable to the search for similarities in the amino acid sequences of two proteins[J].Journal of Molecular Biology, 1970,48:443-453.
  • 10Bharadwaj V,Ghose D,Mani V,et al.Scheduling divisible loads in parallel and distributed systems[M].Los Alamitos,CA:IEEE Computer Society Press,1996.

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