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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles 被引量:2

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摘要 The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.
作者 Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner M.Catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh Rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom May Torda Varga Wei Li Victor Rafael Matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov Yongzhong Lu Yosuke Matsuda Yumiko Miyamoto Urmas Kõljalg Leho Tedersoo
机构地区 Institute of Ecology and Earth Sciences Natural History Museum Gothenburg Global Biodiversity Centre Department of Biological and Environmental Sciences Department of Soil and Environment Department of Forest Mycology and Plant Pathology Section for Genetics and Evolutionary Biology(EvoGene) University of Hawaiʻi at Mānoa Department of Biology Purdue University Northwest Institute of Microbiology GLOBE Institute Dipartimento di Scienze della Vita e Biologia dei Sistemi Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Blaihofstr. SYNLAB Estonia Escuela de Tecnología Médica Centro de Genómica y Bioinformática Norwegian Institute for Nature Research(NINA) School of Life Science and Technology Evolutionary Biology Department of Botany Gothenburg Global Biodiversity Centre Center of Excellence in Fungal Research Westerdijk Fungal Biodiversity Institute Department of Plant Pathology Plant Health and Environment Laboratory Center for Yunnan Plateau Biological Resources Protection and Utilisation Instituto Federal de Educação Instituto de Botânica Institute of Forestry and Rural Engineering Departamento de Micologia Department of Biology&Globe Institute ARS Research Participation Program All-Russian Institute of Plant Protection Department of Biology Ciências Biológicas Instituto de Biología Institute of Biological Research Group Mycology Department of Botany Institute of Microbiology Jawaharlal Nehru Tropical Botanic Garden&Research Institute(JNTBGRI) Institute of Agri-food Center of Applied Ecology and Sustainability(CAPES) Department of Ecology CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Science and Education and The Grainger Bioinformatics Center Department of Experimental Limnology Institute of Biochemistry and Biology Department of Plant Protection Institute of Arctic Biology MTA-EKE Lendület Environmental Microbiome Research Group Institute of Agricultural and Environmental Sciences Department of Natural Environmental Studies Escuela de Biologia Genetic Resource Centre Sydney Medical School and Westmead Clinical School and Westmead Institute for Medical Research Westmead Hospital Biological Research Center Szeged State Key Laboratory of Mycology National Reference Center for Invasive Fungal Infections(NRZMyk) Department of Botany and Plant Pathology Departamento de Ecología Department of Organismal Biology Southern Swedish Forest Research Centre Department of Ecology Institute of Plant and Animal Ecology Manaaki Whenua-Landcare Research Institute of Forestry and Environmental Sciences Department of Biological Sciences Department of Biology Key Laboratory of Marine Biogenetic Resources Department of Biochemistry State Key Laboratory of Soil and Sustainable Agriculture Royal Botanic Gardens Victoria College of Marine Life Sciences School of Food and Pharmaceutical Engineering Graduate School of Bioresources Arctic Research Center
出处 《Fungal Diversity》 SCIE 2020年第6期I0001-I0016,共16页 真菌多样性(英文)
基金 Estonian Science Foundation grants PSG136,PRG632,PUT1170 the University of Tartu(PLTOM20903) the European Regional Development Fund(Centre of Excellence EcolChange).
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