摘要
采用一整套分子模拟方法,从原子水平探究了MIF与二芳基三唑类抑制剂的微观结合模式及结构决定性因素。基于能量计算和结合机理的分析发现:高活性二芳基三唑类抑制剂的设计需要与N_(325)形成较强的氢键相互作用,与非极性氨基酸I_(64)形成较强的疏水相互作用,与Y_(36)、F_(113)、Y_(323)形成π-π相互作用。
In this paper,a set of integrated molecular modeling approach was used to explore the microscopic binding mode and structural determinants of MIF in complex with diaryltriazole inhibitors from the atomic level.Based on the analysis of energy calculation and binding mechanism,it is found that the design of highly potent diarytriazole inhibitors needs to form strong hydrogen bond interaction with N_(325),strong hydrophobic interaction with non-polar amino acid I_(64),and π-π interaction with Y_(36),F_(113) and Y_(323).
作者
许磊
XU Lei(Institute of Bioinformatics and Medical Engineering,Jiangsu University of Technology,Changzhou 213001,China)
出处
《江苏理工学院学报》
2023年第2期93-104,共12页
Journal of Jiangsu University of Technology
基金
国家自然科学基金项目“新型MIF抑制剂的分子设计及其在脑缺血再灌注损伤炎症反应中的作用机制研究”(81803430)
江苏省自然科学基金项目“基于药物大数据与AI技术的MIF抑制剂精准设计及其在脑卒中的神经保护作用研究”(BE2019650)。
关键词
MIF
二芳基三唑类抑制剂
分子对接
分子动力学模拟
MM/GBSA结合自由能
macrophage migration inhibitory factor
diaryltriazole inhibitors
molecular docking
molecular dynamic simulation
MM/GBSA binding free energy