摘要
该文采用密度泛函理论(DFT)的M06-2X方法和MN15方法,结合处理溶剂效应的SMD模型方法,研究在水溶液环境下赖氨酸钠配合物(Lys·Na^(+))的手性转变.研究结果发现:Lys·Na^(+)的手性转变反应可在3个通道上实现,它们分别是α-H以羰基O为桥迁移、α-H迁移到羰基O后氨基N上的H再向α-C迁移以及α-H以氨基N为桥迁移.计算结果表明:α-H以氨基N为桥迁移的反应通道最具优势,在隐性水溶剂效应下该通道的自由能垒为221.6 kJ·mol^(-1),水簇的作用使该能垒降为115.6~119.0 kJ·mol^(-1).研究结果表明:Lys·Na^(+)在水溶液环境下的手性转变很缓慢,其用于生命体同补赖氨酸和钠离子比较安全.
The chiral flip of Lysine Na+complex(Lys·Na^(+))in aqueous solution is studied by using M06-2X and MN15 methods based on DFT(density functional theory)and SMD model method to deal with solvent effect.The study finds that chiral flip reaction of Lys·Na^(+)can be achieved in three channels thatα-H uses carbonyl O atom as bridge,amino group H transfers toα-C after the α-H transferring to carbonyl O atom andα-H uses amino group N as bridge.The calculation shows that the reaction channel of α-H transfers with amino group N as bridge has the most advantage,its free energy barrier is 221.6 kJ·mol^(-1) under the effect of recessive solvent,and the barrier can be reduced to between 115.6 and 119.0 kJ·mol^(-1) under the effect of water clusters.According to the research results,the chiral flipping process of Lys·Na^(+)is very slow in aqueous solution,and it is relatively safe to be used to supply Lys and Na+for life simultaneously.
作者
董雷刚
杨应
黄筱珂
李鹤
赵丽红
姜春旭
王佐成
DONG Leigang;YANG Ying;HUANG Xiaoke;LI He;ZHAO Lihong;JIANG Chunxu;WANG Zuocheng(College of Computer Science,Baicheng Normal University,Baicheng Jilin 137000,China;Collenge of Computer Science,Baicheng Normal University,Baicheng Jilin 137000,China;Physics Group of No.3 Middle School,Songyuan Jilin 138000,China;Department os Basic Medicine,Baicheng Medical College,Baicheng Jilin 137000,China)
出处
《江西师范大学学报(自然科学版)》
CAS
北大核心
2023年第3期227-236,共10页
Journal of Jiangxi Normal University(Natural Science Edition)
基金
吉林省自然科学基金(YDZJ202201ZYTS666,20160101308C)
白城医学高等专科学校科研平台重点课(BYKPT202207)
白城医学高等专科学校高层次人才团队建设课题(BCYZ20220408)资助项目。
关键词
赖氨酸
钠离子
密度泛函理论
溶剂效应
过渡态
自由能垒
lysine
sodion(Na^(+))
density functional theory
solvent effect
transition state
free energy barrier