摘要
目的探究β2整合素/FLNa相互作用的力学调控机制、磷酸化效应与分子结构基础。方法β2整合素/FLNa-WT和T758P晶体结构取自蛋白质数据库(protein data bank,PDB),进行分子动力学(molecular dynamics,MD)模拟,采用MM/PBSA方法计算复合物结合自由能变化,并分析构象演化与残基相互作用等数据。结果β2整合素THR758磷酸化修饰后,复合物的结合自由能下降,拉力累积降低。单纯的力学信号刺激下,β2整合素/FLNa复合物的解离呈现出双相力依赖特性,而磷酸化后复合物的结合解离过程存在单纯的滑移键机制。结论磷酸化将通过减弱M762-G2269残基相互作用,下调β2整合素/FLNa复合物的结合亲和力,张力将双相调节复合物的解离。研究结果有助于加深对炎症反应过程的认识,并为相关药物靶点的发现和抗体设计提供有益参考。
Objective To investigate the mechanical regulatory mechanisms,phosphorylation effects and molecular structural basis of β2 integrin/FLNa interactions.Methods The crystal structures of β2 integrin/FLNa-WT and T758P complex were taken from PDB,and performed molecular dynamics simulations.The MM/PBSA method was used to calculate the binding free energy changes of the complex,and data on conformational evolution and residue interactions were analyzed.Results Following phosphorylation modification of β2 integrin THR758,the binding free energy of the complex and the pulling force accumulation were significantly decreased.The dissociation of β2 integrin/FLNa complex showed a biphasic force-dependent property under the stimulation of mechanical signals.A pure slip-bonding mechanism existed in the binding dissociation process of the complex after phosphorylation modification.Conclusions The phosphorylation would down-regulate the binding affinity of β2 integrin/FLNa complex by attenuating the M762-G2269 residue interaction,and tension would bidirectionally regulate the dissociation of the complex.This study contributes to deeper understanding of the inflammatory response process,and provides useful references for the discovery of relevant drug targets and antibody design.
作者
邵鑫
姬彦儒
黄文华
方颖
吴建华
SHAO Xin;JI Yanru;HUANG Wenhua;FANG Ying;WU Jianhua(Institute of Biomechanics,School of Bioscience and Bioengineering,South China University of Technology,Guangzhou 510006,China;Guangdong Engineering Research Center for Translation of Medical 3D Printing Application,Guangdong Provincial Key Laboratory of Medical Biomechanics,Department of Human Anatomy,School of Basic Medical Sciences,Southern Medical University,Guangzhou 510515,China)
出处
《医用生物力学》
CAS
CSCD
北大核心
2023年第4期655-662,共8页
Journal of Medical Biomechanics
基金
国家自然科学基金项目(12072117,12172137,31972915)。