摘要
EB病毒(EBV)是多种肿瘤的致癌驱动因素.然而,肿瘤发生过程中病毒与肿瘤免疫相互作用的潜在机制仍不清楚.自然杀伤T细胞淋巴瘤(NKTCL)是研究EBV相关淋巴瘤发生的代表性疾病模型.本文整合基因组、转录组和蛋白质组数据,全面报道了NKTCL的蛋白质基因组特征.多组学分析发现EBV基因模式与免疫介导的致癌信号相关.单细胞转录组分析进一步描绘肿瘤微环境的免疫炎症、缺陷和沙漠三种表型特征,与肿瘤-免疫循环的不同设定点相关.EBV与转录因子相互作用引起GPCRome重编程,肿瘤细胞和免疫抑制细胞上CCR1的高表达,从而调控微环境中病毒与肿瘤的相互作用.在NKTCL类器官中,靶向CCR1可清除EBV、激活T细胞和杀伤淋巴瘤细胞,具有潜在的靶向治疗作用.综上,本研究首次发现了一种GPCR介导的肿瘤发生发展机制,将病毒分子的感知效应转化为针对EBV的特异性抗肿瘤疗法.
Epstein-Barr virus(EBV)is the oncogenic driver of multiple cancers.However,the underlying mechanism of virus-cancer immunological interaction during disease pathogenesis remains largely elusive.Here we reported the first comprehensive proteogenomic characterization of natural killer/T-cell lymphoma(NKTCL),a representative disease model to study EBV-induced lymphomagenesis,incorporating genomic,transcriptomic,and in-depth proteomic data.Our multi-omics analysis of NKTCL revealed that EBV gene pattern correlated with immune-related oncogenic signaling.Single-cell transcriptome further delineated the tumor microenvironment as immune-inflamed,-deficient,and-desert phenotypes,in association with different setpoints of cancer-immunity cycle.EBV interacted with transcriptional factors to provoke GPCR interactome(GPCRome)reprogramming.Enhanced expression of chemokine receptor-1(CCR1)on malignant and immunosuppressive cells modulated virus-cancer interaction on microenvironment.Therapeutic targeting CCR1 showed promising efficacy with EBV eradication,T-cell activation,and lymphoma cell killing in NKTCL organoid.Collectively,our study identified a previously unknown GPCRmediated malignant progression and translated sensors of viral molecules into EBV-specific anti-cancer therapeutics.
作者
熊杰
代雨婷
王文芳
张浩
王朝夫
印彤
程澍
钟慧娟
余山河
姜璐
王升跃
方海
张瑞红
诸粤
易红梅
江旭峰
陈佳艺
王黎
许彭鹏
陈赛娟
赵维莅
Jie Xiong;Yu-Ting Dai;Wen-Fang Wang;Hao Zhang;Chao-Fu Wang;Tong Yin;Shu Cheng;Hui-Juan Zhong;Shan-He Yu;Lu Jiang;Sheng-Yue Wang;Hai Fang;Rui-Hong Zhang;Yue Zhu;Hong-Mei Yi;Xu-Feng Jiang;Jia-Yi Chen;Li Wang;Peng-Peng Xu;Sai-Juan Chen;Wei-Li Zhao(Shanghai Institute of Hematology,State Key Laboratory of Medical Genomics,National Research Center for Translational Medicine at Shanghai,Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine,Shanghai 200025,China;School of Life Sciences and Biotechnology,Shanghai Jiao Tong University,Shanghai 200240,China;Department of Otolaryngology,Shanghai Ruijin Hospital,Shanghai Jiao Tong University School of Medicine,Shanghai 200025,China;Department of Pathology,Shanghai Ruijin Hospital,Shanghai Jiao Tong University School of Medicine,Shanghai 200025,China;Department of Nuclear Medicine,Shanghai Ruijin Hospital,Shanghai Jiao Tong University School of Medicine,Shanghai 200025,China;Department of Radiation,Shanghai Ruijin Hospital,Shanghai Jiao Tong University School of Medicine,Shanghai 200025,China;Pôle de Recherches Sino-Français en Science du Vivant et Génomique,Laboratory of Molecular Pathology,Shanghai 200025,China)
基金
supported by the National Natural Science Foundation of China(82130004,81830007,and 82270194)
the National Key Research and Development Program of China(2022YFC2502600)
the Chang Jiang Scholars Program,the Shanghai Rising-Star Program(23QA1406100)
the Shanghai Municipal Commission of Science and Technology Project(23141903100)
the Shanghai Municipal Education Commission Gaofeng Clinical Medicine Grant Support(20152206,20152208,and 20161303)
the Clinical Research Plan of Shanghai Hospital Development Center(SHDC 2020CR1032B)
the Multicenter Clinical Research Project by Shanghai Jiao Tong University School of Medicine(DLY201601)
the Multi-center Hematology-Oncology Protocols Evaluation System(M-HOPES)network from China
the Samuel Waxman Cancer Research Foundation
the Center for High Performance Computing at Shanghai Jiao Tong University。