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目标序列部分确定的翻转距离星树问题

A Problem of Reversal Distance on Star-Tree with Object Partially Fixed
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摘要 讨论翻转距离星树问题,将3SAT问题归约到目标序列部分固定的翻转距离星树问题,证明实例中当有向符号序列个数为3时,若目标序列符号顺序固定,且有部分符号方向给定,则只确定其余符号方向以使得目标序列与已知3条给定序列翻转距离之和最小所对应的翻转距离星树问题也是NP-难解问题.同时,还给出了该问题的多项式时间近似算法. A problem of reversal distance on star-tree is discussed. The problem of 3SAT is induced to the problem of the reversal distance on star-tree with object partially fixed. The fact described below is proved: if an instance has 3 sequences given, and the order and some signs of the symbols in aimed sequence are fixed, it is still NP-hard to solve the problem of reversal distance on star-tree in which only need to decide the signs of the other symbols to minimizing the sum of distance between object and the given sequences. A polynomial approximation algorithm for the problem is given.
出处 《软件学报》 EI CSCD 北大核心 2003年第2期183-189,共7页 Journal of Software
基金 国家自然科学基金~~
关键词 目标序列 翻转距离星树问题 NP问题 算法 计算复杂性 进化树 基因组 algorithm computational complexity evolutionary tree genome reversal distance
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  • 1Wang, Lu-sheng, Jiang Tao. Approximation algorithms for tree alignment with a given phylogeny. Algorithmica, 1996, 16(3):302~315.
  • 2Gusfield, D. Efficient algorithms for inferring evolutionary trees. Networks, 1991,21(1):19~28.
  • 3Kececioglu, J., Sankoff, D. Exact and approximation algorithms for the reversal distance between two permutations. Algorithmica, 1995,13(1):180~210.
  • 4Kececioglu, J., Sankoff, D. Efficient bounds for oriented chromosome inversion distance. In: Proceedings of the 5th Annual Symposium on Combinatorial Pattern Matching. Lecture Notes in Computer Science 807, 1994. 307~325.
  • 5Bafna, V., Pevzner, P.A. Sorting by reversals: genome rearrangements in plants organelles and evolutionary history of X chromosome. Molecular Biology and Evolution, 1995,12:239~246.
  • 6Kececioglu, J.D., Myers, E.W. Combinatorial algorithms for DNA sequence assembly. Algorithmica, 1995,13(1):7~15.
  • 7Hannenhalli, S., Pevzner, P.A. Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals). In: Proceedings of the 27th Annual ACM Symposium on Theory of Computing (STOC'95). ACM press, 1995. 178~189.
  • 8Ma, Shao-han, Designation and Analysis of Algorithms. Ji'nan: Shandong University Press, 1992 (in Chinese).

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