喜树碱类抗肿瘤药物作用模式的柔性分子对接研究

Flexible Molecular Docking Studies of Antineoplastic Camptothecin Derivatives on DNA-topoisomerase I Complex

研究采用柔性分子对接技术 ,将 15个喜树碱类化合物对接到拓扑异构酶I (TopoI) DNA切割复合物中 ,从原子水平和分子力场角度阐明了喜树碱类抗肿瘤药物与DNA ,TopoI的相互作用机制 .研究发现 ,喜树碱分子插入TopoI DNA复合物的切割位点 ,并与Asn72 2 ,Asp5 3 3 ,Lys5 3 2和Lys72 0形成氢键作用网络 .定量构效关系研究进一步表明喜树碱分子可以与TopoI DNA切割复合物形成电荷迁移作用 .该对接模型系统解释了喜树碱类化合物的构效关系、定点突变等诸多实验事实 ,为下一步设计。

Based on the crystallographic structure of human topoisomerase I (Togo I)-DNA covalent complex, a general model for the ternary drug-DNA-Topo I complex for camptothecin (CPT) derivatives has been developed using flexible docking techniques and thus elucidated the mode of action of CPT compounds interacting with Topo I and DNA from the atomic level for further design of novel potent CPT derivatives. In our model, CPT intercalated between the - 1 and + 1 base pairs of the cleavage site, stabilized further by H-bonding network between Asn722, Asp533, Lys532, Lys720 of Topo I and itself. Quantitative structure-activity relationship (QSAR) studies of 20 A-ring substituted CPT derivatives indicate that there may exist pi-pi charge transfer interaction between CPT derivatives and Topo I-DNA complex. Our model of action for CPT provides an excellent fit between CPT and the binding site and is significantly consistent with the current knowledge of experimental mutations that render CPT resistant and structure-activity relationships of CPT derivatives, etc. This model provides a rational basis for further design and synthesis of novel potent CPT antitumor drugs.