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Automated Dynamic Cellular Analysis in Time-Lapse Microscopy

Automated Dynamic Cellular Analysis in Time-Lapse Microscopy
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摘要 Analysis of cellular behavior is significant for studying cell cycle and detecting anti-cancer drugs. It is a very difficult task for image processing to isolate individual cells in confocal microscopic images of non-stained live cell cultures. Because these images do not have adequate textural variations. Manual cell segmentation requires massive labor and is a time consuming process. This paper describes an automated cell segmentation method for localizing the cells of Chinese hamster ovary cell culture. Several kinds of high-dimensional feature descriptors, K-means clustering method and Chan-Vese model-based level set are used to extract the cellular regions. The region extracted are used to classify phases in cell cycle. The segmentation results were experimentally assessed. As a result, the proposed method proved to be significant for cell isolation. In the evaluation experiments, we constructed a database of Chinese Hamster Ovary Cell’s microscopic images which includes various photographing environments under the guidance of a biologist. Analysis of cellular behavior is significant for studying cell cycle and detecting anti-cancer drugs. It is a very difficult task for image processing to isolate individual cells in confocal microscopic images of non-stained live cell cultures. Because these images do not have adequate textural variations. Manual cell segmentation requires massive labor and is a time consuming process. This paper describes an automated cell segmentation method for localizing the cells of Chinese hamster ovary cell culture. Several kinds of high-dimensional feature descriptors, K-means clustering method and Chan-Vese model-based level set are used to extract the cellular regions. The region extracted are used to classify phases in cell cycle. The segmentation results were experimentally assessed. As a result, the proposed method proved to be significant for cell isolation. In the evaluation experiments, we constructed a database of Chinese Hamster Ovary Cell’s microscopic images which includes various photographing environments under the guidance of a biologist.
作者 Shuntaro Aotake Chamidu Atupelage Zicong Zhang Kota Aoki Hiroshi Nagahashi Daisuke Kiga Shuntaro Aotake;Chamidu Atupelage;Zicong Zhang;Kota Aoki;Hiroshi Nagahashi;Daisuke Kiga(Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, Yokohama, Japan;Imaging Science and Engineering Laboratory, Tokyo Institute of Technology, Yokohama, Japan)
出处 《Journal of Biosciences and Medicines》 2016年第3期44-50,共7页 生物科学与医学(英文)
关键词 High Dimension Feature Analysis Microscopic Cell Image Cell Division Cycle Identification Active Contour Model K-Means Clustering High Dimension Feature Analysis Microscopic Cell Image Cell Division Cycle Identification Active Contour Model K-Means Clustering
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